Danio aesculapii (panther danio): 130235130
Help
Entry
130235130 CDS
T11734
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
daes Danio aesculapii (panther danio)
Pathway
daes04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130235130 (ddx3xa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daes03019
]
130235130 (ddx3xa)
03041 Spliceosome [BR:
daes03041
]
130235130 (ddx3xa)
03036 Chromosome and associated proteins [BR:
daes03036
]
130235130 (ddx3xa)
Enzymes [BR:
daes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130235130 (ddx3xa)
Messenger RNA biogenesis [BR:
daes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130235130 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
130235130 (ddx3xa)
Spliceosome [BR:
daes03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130235130 (ddx3xa)
Chromosome and associated proteins [BR:
daes03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130235130 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
130235130
NCBI-ProteinID:
XP_056321506
LinkDB
All DBs
Position
9:34312401..34329444
Genome browser
AA seq
841 aa
AA seq
DB search
MSHVVVDGSHGLDQQLAVLDLNSADGQGAGTGRRYIPPHLRNKDASKNAGNAYSSGRQSG
YSVAPVQSFSPKQYPQSWHPEGNQRHRHNYPTGWNDFRTGNYLERADLLLRSSICEGMVV
LSALYLCLGSQRFASQELAFYHTYTSGWPDRCASPARTDSSVATDGNEDAASVISWADRC
DSPGWDGSRTNGFVNGYHDGRMNGTANFTRGPLRNDRGGRGGFRGNRNGASFNQPVHNAG
YGTYENKDGGWNSVVNRDAYASFGGRSDRGKSAFFNDRGASSRGRYERGGFGGGTGGNSR
WVEESRDEEDWSKPTPPNERLEHELFSGSNTGINFEKYDDIPVEATGSNSPGHIESFHDV
DMGEIIMGNITLSRYTRPTPVQKYAIPIIKAKRDLMACAQTGSGKTAAFLLPVLSQIYTE
GPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAYRSRVRPCVV
YGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDYCKYLVLDEADRMLDMGFEPQ
IRRIVEQDTMPPKGSRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVV
WVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDR
EEALHQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL
ATSFYNDKNSNITKDLLDILVEAKQEVPSWLENLAYEHQHKSTNRGRPKRFSGGFGARDY
RQMAGGGNTFGNRGARNTGGHGGNRGFGGNKGGFGSFGGDSYGGTYGNYGGNYTQVDWWG
N
NT seq
2526 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacggttcacacggtctagatcagcagcttgctgtcttagac
ttgaactcagctgatggacagggtgctggcactggccggcgttacattcctcctcatttg
agaaacaaagacgcatcaaaaaatgcaggaaatgcttattcctctggtagacagagcggt
tattcagtggcaccagtacagagcttttctcccaaacagtatcctcagagttggcaccct
gagggaaaccaaagacacaggcataactatccaactggatggaatgactttaggactggt
aactatttagaaagagctgatttgctattgcgttcctccatttgtgaaggaatggttgtc
ttaagtgccctatacctctgcttaggttcccagagatttgcgtcccaggagctcgcattt
tatcacacctacactagtggctggccagacagatgtgcctctcctgcgcgcaccgacagc
agtgtagccaccgatggaaatgaggacgcagccagtgttatcagctgggctgatcgctgt
gattctccaggatgggatggtagtcgtaccaatggttttgtcaatggatatcatgatggt
cgtatgaatgggactgcaaacttcacccgtgggcctcttcgcaatgaccgaggaggacga
ggtggctttcgtggaaacaggaatggtgcttcctttaaccagccagtgcataatgcaggt
tatgggacatatgaaaacaaagatggaggctggaactctgtggtgaacagggatgcgtat
gcaagctttggtgggcgatctgacagaggaaagtctgcattcttcaatgacagaggagct
agctcaagaggacggtatgagcgtggaggctttggaggaggaacaggaggaaacagccgt
tgggttgaagagtccagagatgaagaggactggtcaaagccaacgccccccaatgagcgt
ctagaacatgagctgttctctgggagcaacacggggattaactttgagaagtatgatgac
attcctgtggaggccactggatcaaactctcctgggcatattgagagtttccatgatgta
gacatgggtgagataattatgggcaacatcaccctgagccgctacacacgtcctactcct
gttcaaaagtatgcaattcccatcatcaaggccaagagggacctgatggcctgtgcacag
acaggctcggggaagactgcagcctttttgcttcctgtgctgagtcagatctacactgag
ggacctggagaggcactgcaggccaccaaagccagcacccagcaggagaatggaaagtat
gttcgtcgtaagcagtatcccatttctcttgtcctggctccaaccagagaacttgcactt
cagatttatgacgaggccagaaagtttgcttaccgctccagagtgcggccatgtgtagtg
tacggtggtgcagatattggccagcagatccgtgatttggaaagaggctgtcatctgctg
gtggccacccctggtcgtttggtagacatgatggagcggggcaagattggtctggattac
tgcaaatatctggtgttggatgaagctgacagaatgcttgatatgggttttgaacctcaa
atcaggcgtattgtggaacaggacacaatgcctcctaaaggttctcgccagaccatgatg
ttcagtgccaccttcccgaaagagattcagattctggcccgtgactttcttgaggagtac
atcttccttgctgtgggccgtgtgggctccacctcagagaacatcactcagaaggtggtt
tgggtagaagagaatgacaagcgctccttcctccttgacctgctcaatgctacaggcaag
gattctctcacactagtgtttgtggagaccaagaagggcgcagacgctcttgaggacttt
ctctaccgtgagggctatgcctgcaccagtatccatggtgaccgctctcagcgtgatcgt
gaggaggcgcttcaccagtttcgttctggacgatgccccatcatggttgccactgctgtg
gctgcacgtggccttgacatctccaacgtgaaacacgtcatcaactttgacttgcccagt
gacattgaggagtatgtccatcgcattggtcgtacaggccgcgtgggaaaccttgggctg
gccacatccttttacaatgataagaacagcaacatcactaaagatctgctagacatcctg
gtggaggccaaacaagaggttccttcctggcttgagaaccttgcctatgagcaccagcac
aagagcaccaaccgtggacgtcccaaaaggttctctggtggttttggggccagagattac
cgccagatggctgggggtggcaacactttcggcaaccgtggcgctcgcaacactggcggc
catggaggaaacagaggttttggaggcaataagggtggctttgggagtttcggtggtgac
agctatgggggcacctatggaaactatggaggaaactacactcaggtggactggtggggc
aactaa
DBGET
integrated database retrieval system
