Danio aesculapii (panther danio): 130242116
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Entry
130242116 CDS
T11734
Symbol
rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit isoform X1
KO
K07466
replication factor A1
Organism
daes Danio aesculapii (panther danio)
Pathway
daes03030
DNA replication
daes03420
Nucleotide excision repair
daes03430
Mismatch repair
daes03440
Homologous recombination
daes03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130242116 (rpa1)
03420 Nucleotide excision repair
130242116 (rpa1)
03430 Mismatch repair
130242116 (rpa1)
03440 Homologous recombination
130242116 (rpa1)
03460 Fanconi anemia pathway
130242116 (rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
daes03000
]
130242116 (rpa1)
03032 DNA replication proteins [BR:
daes03032
]
130242116 (rpa1)
03400 DNA repair and recombination proteins [BR:
daes03400
]
130242116 (rpa1)
Transcription factors [BR:
daes03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130242116 (rpa1)
DNA replication proteins [BR:
daes03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
130242116 (rpa1)
DNA repair and recombination proteins [BR:
daes03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
130242116 (rpa1)
MMR (mismatch excision repair)
130242116 (rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
130242116 (rpa1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
DUF8448
Cas7fv-like
Motif
Other DBs
NCBI-GeneID:
130242116
NCBI-ProteinID:
XP_056330103
LinkDB
All DBs
Position
15:22116116..22159976
Genome browser
AA seq
600 aa
AA seq
DB search
MTLTLSEGAIESLTKGTEVNNPVLQCVNIRKIDGGNGLSRFRVMMSDGLHTMSSFMLSTQ
LNPMAEQNQLATNCVCILKRSVTNVLKDGRRVVVILDIEVLKSADQMPGKIGDPTPYVEG
QSKAPSTAPAPTARPLQPQNGSDGSMNRPSAQSFGKKPMAAPNTPGGSSKVVPIASLNPY
QSKWTIRARVTNKSAIRTWSNSRGDGKLFSMELVDESGEIRATGFNNEVDKFFSLIEQGK
VYYISKGTLKIANKQFSSLKNDYEMTLNGETSIIPCEDSHDVPMVQCDFVSIADLESREK
DTILDVIGVCKNTEDMTRIMTKNSREVSKRNIQLIDMSGRVIQLTMWGSDAETFDGSGQP
ILAIKGARLSDFGGRSLSTLYSSTVMINPDIPEAYKLRGWYDKEGHALDGQSMTELRGPG
GGNTNWKTLAEVKNEHLGHGDKADYFSCIATIVYIRKENCLYQACPSKDCNKKVVDQQNG
MFRCEKCDKEFPDFKYRLMLSANIADFGDNQWVTCFQDSAEILLGQNSAYLGQLKDTNEA
AFDEVFQHANFNTFVFRNRVKLETYNDESRIKVTVVDAKPVDHREYSKRLIINIRKLAAK
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atgactcttacactgtcggaaggggcaattgagtcccttactaaaggaactgaagtcaac
aatcctgttcttcagtgtgtgaacattcgcaagattgatggaggtaatggtttgtcccgt
ttccgtgtcatgatgagtgatgggctgcacactatgtcctcattcatgctgtccacacag
ctcaatcccatggctgagcaaaaccagttggccactaactgtgtttgtatactgaaaaga
agcgtcactaatgttctcaaggatggacgacgggtggtggttatactggatatagaagtg
ctcaagtctgctgaccaaatgccaggaaaaattggagacccaactccttatgttgagggt
cagtcaaaggcaccgagtacagctccagctccaactgcacgtccattacagccacaaaat
ggaagcgatggttcaatgaacaggccttctgctcagagcttcgggaaaaagccgatggct
gcacccaacactcctggaggcagctccaaagttgtgcctatcgccagcctcaatccatac
cagtcaaaatggacaattagagcccgagtcactaacaagagtgccatccgcacgtggagt
aactcaagaggggatggaaaactcttctcaatggagcttgtggatgaaagcggggagatc
agagcaactggattcaataatgaggtggacaaattcttctccctcatcgagcagggaaaa
gtctactacatctccaaaggcaccctaaagattgccaacaaacagttctcctcactcaag
aacgattacgagatgactctcaatggcgagacgagcatcatcccttgcgaggacagccat
gacgtccccatggtgcagtgcgactttgtatccattgcagacctggagtctcgggagaaa
gacaccatcttggatgtgatcggagtgtgtaaaaacacagaggatatgacgcgcatcatg
accaagaacagccgtgaggtatccaagaggaacatccaactgattgacatgtctggcaga
gtcatccagctgaccatgtggggcagtgatgcagagacgtttgatggcagtggtcaaccc
atcttggccattaagggtgcaagattgtctgacttcggtgggcgttctctctccactctc
tatagcagcacagtcatgatcaaccctgacattcctgaggcgtacaaactgcggggctgg
tatgataaggaaggacatgcattggatggacagtccatgacagaactgagaggaccaggt
ggtggaaacacaaactggaagaccctggcggaagtcaaaaatgagcatcttggccatgga
gacaaagctgattatttctcttgcatcgccaccatagtctacatccgaaaagagaactgc
ttgtatcaggcctgtcccagtaaagactgcaataagaaggtggtggaccagcagaatggc
atgttccgctgtgagaaatgcgacaaagagttccctgacttcaaatatcgtctcatgctc
tcggccaacattgctgattttggagacaaccagtgggtgacttgctttcaagacagtgcc
gagattcttctgggccaaaattcggcttatcttggccaactaaaggacacgaacgaagct
gcatttgatgaggtctttcagcatgcaaacttcaatacctttgtcttccggaaccgagtg
aagctggagacctacaatgatgaatctcgcattaaagtgacagtggtggacgccaagcct
gtggaccaccgagaatacagcaaacggctgatcatcaacataaggaagttggctgcaaaa
tag
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