Danio aesculapii (panther danio): 130245040
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Entry
130245040 CDS
T11734
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
daes Danio aesculapii (panther danio)
Pathway
daes03013
Nucleocytoplasmic transport
daes03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130245040 (srrm1)
03015 mRNA surveillance pathway
130245040 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daes03019
]
130245040 (srrm1)
03041 Spliceosome [BR:
daes03041
]
130245040 (srrm1)
Messenger RNA biogenesis [BR:
daes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130245040 (srrm1)
Spliceosome [BR:
daes03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
130245040 (srrm1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
130245040
NCBI-ProteinID:
XP_056333644
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All DBs
Position
17:complement(27357081..27371084)
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AA seq
928 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLEKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFVFNQLEEKNPDGKMMQINLTGFLNGKNAREFMKDLWPLLLSAQENIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDEDKREKENKERAQSKSPKRRKSRSPVKRDRKS
SPSRSRSPRRKMSPAASPPSSPPNHKEEPKREPDQSESSKPEPLIQEASSTSDLVTEMKP
DSVSEPVKESSPDKTSKSEDRPKPRDREKDGRKDRPRHRSRSRSPRSRRRPRSRSRSFSP
RRRMSPRRRISPRRRSPPRRQPPSRHRRSRSPVRRRRSRSRSSSGSSSSRSPHKRAGKRG
SATPPRKLARRTDLSSPPRRRGRSPSGPDTSPSAVKHRPGGRNDSRSPSPKPRRSDASDS
EEDKLGKGSTADSVQQRRQYRRQNQQSSSDTGSSSSSEDEGPRRQNRGAGARNGEIRRRR
SHSPASPRRRHRDASPRKRRSPSPPGRRHRSQSPVRRRRSPSPPPRRRSPSPPPRRFTPP
IQRRYSPPSPPAQKRRSSGSPPKRRRSPSPMSKRRIPPSPPPKRRMSPSPPPKRRKSPSP
MSKRRTSPSVSKRRTSPSPVAKHRRSPSPTSKRRACASPVSKRRDSPSPAPQRRGSPSSM
PRHRGSPSPVTKRHTSRSPKRSRGSSPGKRRTPPSSASPPPRHRRNSPNPPPAQRGRDTR
SSPPAHTTRVSSSPPSRYGASGSSPQRQRRQTSPSHSTRPIRRVSRTPEPRKSQRGSQSP
QPERRQVSRSPSASPPPAQKRPASVSPSRSTSRSPPPPAKKNSSVSPSPSPNKNSDAEGG
KKKKKKKEKKHKKEKKHKKHKKQKKEKGGEEKSGGATGGQGPEAEPDSDQKKESESEVED
SLDDLEKHLREKALRSMRKAQMSPSSQS
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggttttttccgcggcaccagtgcggagcaggataaccgcttcagcaacaaa
cacaagaaactcttgaagcagctgaagtttgcagaatgtctggagaaaaaggtggatatg
accaaggtcaacctggaagtcatcaagccctggatcacccagcgtgtgacggagatactc
ggcttcgaggatgatgtggtcattgagtttgtcttcaaccagctggaggaaaagaatcca
gatggaaagatgatgcagattaatttgacaggttttctgaatggaaagaatgctcgggag
ttcatgaaagacctctggccgctgttgttaagcgcccaggagaacatcgccggtatccca
tcagcattcctggagcagaagaaagaggagatcaaacagagacagattgaacaggagaaa
ctcgcctctctgaaaaaagtagatgaagataaaagggagaaggagaacaaagaaagagct
cagtcaaaaagccctaaacggagaaagtctcgctcccctgtgaagcgtgaccgtaaatcc
agtccctctcgttctcgctctcctcgacgaaaaatgagcccggctgcttcgccaccttcc
agtccacccaatcataaagaagaaccgaagcgagaaccagaccagtcagagagttccaaa
ccagagccgctcattcaggaggcttcatctaccagtgatcttgtgactgagatgaagccg
gactctgtgtcagagcctgtgaaagagtcctctccagacaaaacatcaaaatcagaagac
cggcccaaacccagggacagggagaaggatggacgcaaagatcgtccacgccaccgatct
cgttctcgatcacctcgttcacgcagacgacctcgatcccgctctaggtcattctctcct
cgccggagaatgagtcccaggaggcgaatctctccaagacggaggagtcctcctagacgc
cagcctccctctagacatagacgtagccgctcacctgtccgcaggcggcggtctcgctcc
cgctcctcctcaggcagctcctcctctcggtcaccacacaagagagcaggaaaacgtggg
tcagcaaccccgcccagaaaacttgcacgtcgcacggacctctccagccccccaagaaga
cgaggccgcagtccttcaggaccagacaccagcccttcagctgtaaagcacaggcctggt
ggaagaaacgactctcgctctccttctccaaaacccaggcgatctgatgcatcagattca
gaggaggataagttgggcaaagggtcaacggcagattctgtccagcagcgacgtcagtat
cgcagacagaatcagcaatcctcttcagacacaggttcatcctcttcatctgaagatgaa
ggtccaaggaggcagaatagaggtgcaggcgccaggaatggagaaatcaggaggagacgg
agccattcacctgcatcaccacgcaggcggcacagagatgcatccccaagaaagagacgt
tctccgtcacctcctggacgtagacatcgttcacagtctcctgttcgccgccgcaggtca
ccctctcctcccccaagacgcagatctccatctccacctcctcggcgctttactccccca
attcagcgtcgatacagtcccccctcccctccagcccaaaagagacgctcatcagggtct
cctcccaaacggagacggtctccttcacccatgtccaagcgtagaatacctccatcacct
ccccccaaacgcagaatgtctccatcacctccccctaaacgcagaaagtctccatcaccg
atgtcaaaacgcagaacatctccatctgtgtcaaaacgcagaacgtcaccttcccctgtg
gctaaacacagaaggtctccatcacccacgtctaaacgtagagcatgtgcttcacctgtg
tctaaacgcagggattctccctcacctgccccgcaacgtagaggttctccttcttccatg
cccaggcatagagggtcaccctcccctgtgaccaaacgccacacctctcgatcccccaaa
aggagtcgtggcagcagtccaggaaaaagacgtactccaccctcttctgcttcacctcca
cctcgccaccgcagaaactctccaaatccccccccagcccaacggggcagagatacccgc
tcttctccccctgcccacactactcgagtgtcttccagtcctccaagtagatatggagcc
tctgggtcctccccgcagagacaaagacggcagacatccccgtcacacagtaccagaccc
attcgcagggtttcccgcactccagaaccacgcaaatctcaaagagggtctcagagtccg
cagccagaaagaaggcaggtttcacgttcaccgtctgcttctcctcctccggctcagaag
cggcctgcttcagtctcaccctctcgctccactagccgatctccacctccacctgcgaaa
aagaacagcagtgtctccccgagcccttcacctaacaagaattctgatgcagaaggtggt
aagaagaagaaaaagaagaaagaaaagaaacacaagaaagaaaagaaacacaagaagcat
aagaaacagaagaaggagaagggtggagaagaaaaaagtggtggggcgacaggaggacaa
ggaccagaagcagagccagactctgaccagaaaaaggaatcagagagtgaagtagaagac
agtttggatgatctggagaagcacctacgtgagaaagctcttcgctcaatgaggaaggcc
cagatgtctccatcatctcagtcctga
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