Danio aesculapii (panther danio): 130246758
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Entry
130246758 CDS
T11734
Symbol
skic2
Name
(RefSeq) helicase SKI2W
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
daes Danio aesculapii (panther danio)
Pathway
daes03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130246758 (skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daes03019
]
130246758 (skic2)
Enzymes [BR:
daes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130246758 (skic2)
Messenger RNA biogenesis [BR:
daes03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130246758 (skic2)
mRNA degradation factors
3'-5' decay
Ski complex
130246758 (skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
Helicase_C
DEXQc_Suv3
ResIII
MTR4-like_stalk
DUF3516
HTH_23
Motif
Other DBs
NCBI-GeneID:
130246758
NCBI-ProteinID:
XP_056335864
LinkDB
All DBs
Position
19:complement(28039228..28086629)
Genome browser
AA seq
1251 aa
AA seq
DB search
MDKIDLPPVGPDDLPLSLLEMGCSGRFELITHTLPKNKPLPPHSTLPHGLPPTCLDLKTE
VEKRFLRDPAWLPVHDVDDAFSKFLKISKREKEVDSLLHCSLSPLHSGLSVVRDPTTGML
LDFTEVLLEDTALSAKNSLSLQRQPGPPSESLRGSNTNYPFLPAGMEELTLEQIKNKSEL
EEDIDFEKDLMTVPPGLKAGMDFSDKEARSTKSEVNLLSLLSTFDDVLDAPPEEKEGVSQ
KEEIVKLPRTNSLEDLGIKDTGSSPSQPQGNTASLTEQKKKNQEEEKGDNKKWAIPVDIS
SPCADFYKRIPDPAFKYPFELDVFQKQAILRLEAHDSVFVAAHTSAGKTVVAEYAIALSQ
KHMTRTIYTSPIKALSNQKFRDFKNTFGDVGLLTGDVQLNPEGSCLIMTTEILRSMLYNG
SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPEHVSIILLSATVPNAVEFSEWIGRI
KKRHIYVISTIKRPVPLEHYLYTGNSTKTQKELFMLLDATGNFLTKGYYAAVEAKKERTS
KHAQSFGTKNVSQHNTTASQDRAVWQTLLNYLSQRQQTPVVAFTFSRTRCDENARSLTSL
DLTTSIEKSEIHSFLQKSLTRLRGGDRQLPQILLMRDLLKRGIGVHHSGILPILKEVIEM
LFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGL
DATGTVIILCKAGVHDMGDLHAMMLGKPTVLHSQFRLTYTMILNLLRVEALRVTDMMKRS
FSENHRDTQAHEKRIRELRNTLSSLPPLDTEGQLSDLLSYYHTITELHITTQSLQQAVLE
SVNGLKALSVGRVVVVNNSQHHNSLGVLLQVSSDAVNRTFTALIICEKGNEEAVGDDQSN
KVVLPIYSTTLFIPEGPCSHTVQKLKLQDISAITTKALKVIPERIIDNYNKRQQPRFRLD
PPGQAISTATQELLRLAEANMGGMTILDPVNDLHLKGVDVVEGVMRQRVLQDSLKDFHCV
HSPTFSEQFTRVQERMSVQEELDKLLFLVSDQSLTLLPEYHQRIKVLEALQYVDSSGAVQ
LKGRVACQISSHELLLTELLFENTLSPLAPEESAALLSCLVFTQNTQIEPHITNTLQEGI
SQVLAVAQRIGDLQRDCGIAQTAEDFVAQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGT
IVRCIQRLDEVLKEVRQAARIVGDSVLGSKMERASLSIRRDIVFTASLYTH
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
atggacaaaatagatttgcccccggtgggtcctgatgacttgcctctgtctctgctggag
atgggctgttctgggagatttgagctcatcacgcacacactacccaaaaacaaacccctg
cctccacacagcactctccctcatggattgcctcctacttgtctggatttaaagacagaa
gtagaaaagcgttttctgcgagatcctgcttggctcccggtacatgatgtagatgatgcc
ttcagcaagttccttaagataagtaagagagaaaaagaggtggactctctcctgcattgt
tcgctgtctccactgcattctggtctgtctgtggtcagagatccaaccaccggtatgctg
ctggatttcactgaggtgttattagaggacacagcattgtctgcaaaaaattccctctca
ttacaaagacaacctggacctccgtcagagagtctgagagggagcaacacaaactatcca
tttcttccagctggaatggaagaactgacgttagagcagattaaaaacaagtcagagctg
gaagaagacattgactttgagaaagatttgatgacagttcctcctgggctgaaggctggt
atggacttcagtgacaaagaagccaggagcacaaagagtgaggtgaacctgctgtcactt
ctatctacttttgatgatgtccttgatgctccaccagaggagaaagagggcgtctcacaa
aaagaggagattgttaaacttcccagaactaacagcctggaggacctgggcattaaagat
acgggcagctctccttcacagcctcaagggaacacagccagtctgactgaacaaaagaag
aaaaaccaggaagaagaaaagggagacaataaaaaatgggccattcccgtggacatcagc
tcaccatgtgctgacttttacaaacggatccctgatccagcgtttaagtatccctttgag
ctggacgtgtttcagaagcaggctattctccgtctggaagctcatgattctgtctttgtt
gcggctcacacctcagccggcaagactgtggtggctgaatacgctattgcactttcccag
aaacacatgaccaggaccatttacacctcccccattaaggccttgtccaatcagaagttc
cgagacttcaagaacacattcggtgatgtgggacttttgactggagacgtgcaactgaac
ccagaaggctcttgtctcattatgaccactgagattttgagatcgatgctctataatggc
tcggaggtcatcagagatctagaatgggtcatttttgatgaggttcactacatcaatgac
gcagagagaggagtggtgtgggaggaagtgctcatcatgttgccggagcatgttagcatc
atcctgctcagtgccacagtgccaaacgcagtggagttcagtgaatggatcgggcgtatc
aagaagcgacatatttacgtgatcagcacaattaagaggcctgttcctctagagcactat
ctctataccggcaacagcaccaagactcagaaagagctgtttatgctgctggacgccact
ggaaactttctcactaaaggctactatgccgcagtggaagccaagaaggagcgcactagt
aaacatgcacagtcttttggcacaaaaaacgtatcgcagcacaacacaacagccagtcag
gatcgtgcggtgtggcagacgctgttgaattatctgtctcagaggcagcagactccagtg
gtggcattcacattctctcggacccgctgtgatgaaaatgctcgctctttgacctctctg
gacctcaccacctccatagagaagagcgagatccactccttcctgcagaagagcttgacc
agactgagaggaggcgatcgacagctacctcagattctgctgatgcgtgatttgttgaag
agagggattggtgttcatcacagcggcatcctgccaatcctgaaggaagttatcgaaatg
ctcttctccagaggtttagttaaggttctgtttgctacagagacatttgccatgggtgtg
aacatgcctgccagaactgttgtgttcgacagcatccgcaaacatgacggcacaggattc
agaaatcttctgcccggtgagtacattcagatggcgggtcgtgccggcagaagaggtttg
gatgctacaggaaccgttatcatcctctgtaaagctggagttcatgatatgggagacctt
cacgccatgatgctggggaagccgacggtgctgcactcccagttcagactgacctacacc
atgatcctgaatctgctgcgtgtggaggccctgagggtcaccgacatgatgaagaggagc
ttctctgaaaaccacagggatacacaggctcacgagaagagaataagggagctgagaaac
actctgtcttctcttcctccgctggacacggaggggcagttgtctgatttactgtcatat
taccacacaatcacagagctgcacatcaccactcagagcctgcagcaagctgttctggag
tcagtcaatggacttaaagctctgtctgttggaagggtggtagtagtgaacaacagccag
catcacaactctctgggagtccttctacaggtgtccagcgatgcagtaaatcgcaccttc
accgctctcattatctgtgagaagggtaacgaggaggcggtcggtgatgatcagtctaat
aaagttgtacttcccatctatagcacaacactgtttattccagagggaccctgcagtcat
actgtgcagaaactgaagttgcaggacatttctgctattacaaccaaagcactcaaagtc
atcccagagagaatcattgacaactacaacaaaagacaacagccacgcttcaggcttgat
ccaccaggtcaagctatctctacagcaactcaggagctccttcgtttggctgaggcaaat
atgggtggcatgactatccttgacccagtgaatgacctgcacctgaagggagtggatgtg
gtggagggtgtgatgaggcagcgagtgttacaagactctctaaaagacttccactgtgtc
cactcacccaccttctctgaacagtttacacgtgtgcaggagagaatgagtgtacaggaa
gagcttgataagcttctgttcctggtgtctgatcagtcgttgacacttctgcctgagtac
catcagagaatcaaggtgctggaagcgctgcagtatgtggacagcagtggtgcggttcag
ctgaagggtcgtgtggcttgtcagatcagcagtcatgagctcttactgactgaactcctg
tttgagaacactctgagtcctctggcccctgaggagagcgccgccctgctgtcctgcctc
gtcttcacacagaacacccagatagaaccacacatcaccaacacgctgcaggagggaatc
agtcaagttcttgctgttgcccagcgtatcggtgacctgcagagagattgtgggattgct
cagaccgctgaagactttgtggcccagttcaagtttggcctgactgaggttgtgtactgc
tgggcaagaggaatgccttttgctgagatagcccagctgacggatgtgcaggaggggaca
atcgtgcgctgcatccagaggctggacgaggtcctgaaggaggtccgacaggctgctcgc
attgtgggagactctgtcctgggcagcaagatggaaagagcctctctgtccatacgcaga
gacattgtgttcaccgcctcgctctacacacactga
DBGET
integrated database retrieval system
