Danio aesculapii (panther danio): 130248127
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Entry
130248127 CDS
T11734
Symbol
ddx1
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
daes Danio aesculapii (panther danio)
Brite
KEGG Orthology (KO) [BR:
daes00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
daes03041
]
130248127 (ddx1)
03016 Transfer RNA biogenesis [BR:
daes03016
]
130248127 (ddx1)
Enzymes [BR:
daes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130248127 (ddx1)
Spliceosome [BR:
daes03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130248127 (ddx1)
Transfer RNA biogenesis [BR:
daes03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130248127 (ddx1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
130248127
NCBI-ProteinID:
XP_056337645
LinkDB
All DBs
Position
20:34114957..34127293
Genome browser
AA seq
740 aa
AA seq
DB search
MAAFGEMGVMPEIAQAVEEMDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETIKDLQEGKKGRSAVKTGGAVFSKWQMNPFDRSTAFAIGSDGLCCQSREFKEWH
GCRTTKAVTKGRYYYEVACHDQGLCRVGWSTAQASLDLGTDKYGFGFGGTGKKSHNKQFD
SYGEEFTMHDTIGCYIDLEKGHVSFSKNGNDLGLAFEIPQQLRSQPFFASCVLKNAELKF
NFGDEAFKHQPKDGYVALTQAPEGHVVKSSQTGSAKVTQVKSSSNAPRALIIEPSKELAE
QTLNNVNQFKKYVDNPKLRDLLIIGGVAAKEQLNVLESGVDIVVGTPGRLDDLISTGKLD
LSQVRFLVLDECDGLLSAGNTDFIMRIYNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
KIMHFPTWVDLKGEDSVPETVHHVVVTVNPKNDKLWERLGKNHIRTDEVHAKDDTRPGAN
SPEMWSEAIKILKGEYAVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIKQGGGPDKKGHQF
SCVCLHGDRKPNERKYNLERFKKQEVKFLICTDVAARGIDIRGVPYVINVTLPDEKENYV
HRIGRVGRADRMGLAISLVAMEKEKVWYHVCASRGKGCYNTRLKENGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPVDEFDGKVTYGQRRATGGGLYKGHVDILAPTVQELANLER
EAQTSFLHLGYLPNQLFKAF
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atggcagcattcggcgaaatgggagtgatgcctgaaattgcacaggcggtggaagaaatg
gactggctgttgccaacagacatccaggccgaatccattccactgattctgggtggagga
gacgtgctcatggctgctgagactggaagcggaaaaactggagccttcagtattccagtc
atccaaatagtctatgaaaccattaaagacctgcaggagggaaaaaagggacgcagcgcg
gtaaagacaggaggagcagttttcagtaaatggcagatgaacccctttgatagaagtaca
gcatttgctattggttcagatggcttgtgctgtcagagcagggagttcaaagaatggcat
ggctgtcgtaccaccaaagcagttacaaaagggaggtattattatgaagtagcctgtcac
gatcaagggctgtgcagggtgggctggtccactgcccaggcatcactggacttgggaact
gataaatatggatttggctttgggggaaccggaaagaaatctcacaataagcagtttgat
agttatggagaggagttcacaatgcacgacaccattggatgctacatagatctggaaaaa
ggccatgtgtcattctccaaaaatgggaatgatctgggtttggcttttgaaatccctcag
cagctgagaagtcagccattctttgcttcctgtgtgttaaagaatgctgaactgaaattc
aactttggcgatgaagctttcaaacaccaacccaaagacggatatgtggccctgactcag
gctccagaaggtcatgtggtcaaatccagccagacaggcagtgctaaagtgactcaggtc
aaatccagctccaacgcccccagagctcttatcatcgagccgtctaaagaactggctgaa
caaaccctcaataatgtcaatcagttcaagaagtatgtggataaccctaaactgagagat
ctgctgattattggaggagtggctgctaaagaacagctaaatgttttagaaagcggggtt
gacattgtggtcggcaccccaggcagactggatgatctcatatccacaggaaagctggat
ctttcccaagtccgtttcctggtgctggatgagtgtgatggactcctgtcggccggcaat
actgacttcatcatgaggatctacaaccagatcccacaagtcacctcagacggcaagaga
ctacaggtgattgtttgttctgctacgctgcactcatttgacgtgaaaaagctctcagag
aagatcatgcatttccccacatgggtggatctgaagggagaagattctgtaccagaaact
gtccatcatgtggtggtgactgtcaacccaaaaaacgacaagctttgggagagactgggg
aagaaccacatcaggactgatgaagttcatgcaaaggacgacacacgacctggagccaac
agcccagagatgtggtcagaggctattaagatcctgaagggggagtacgcagtcagagcc
attaaagagcacaagatggatcaggccatcatcttctgccggacaaagatcgattgtgat
aatatggagcagtacttcatcaagcaaggaggaggaccagataagaaaggacaccagttc
tcttgtgtctgccttcatggtgacagaaaaccaaatgaacgcaagtataatttggagcga
ttcaagaaacaggaggtgaaatttctgatttgcacagatgtggctgctagaggaattgat
atccgtggtgttccttatgtgataaatgtaactctaccagatgagaaggagaactatgtt
catcgcattggaagagttggcagagcagacaggatgggtttggccatatcactggttgca
atggagaaagagaaggtgtggtaccatgtttgtgctagcagaggaaaaggctgctataac
accagactcaaagagaatggaggatgcactatttggtacaatgaaaaagagttgttgtca
gacatcgaagagcatctgaaatgcaccatcactcagtgtgaacctgacattaaagttcct
gtggatgaatttgacggtaaagtgacgtacggccagcgcagggccacgggaggtggtcta
tacaagggccatgtggatatattggccccgactgtacaggaactggccaatttggagaga
gaggctcaaacatccttccttcatttgggctatctacccaaccagctctttaaagccttc
tag
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