Desulfocurvibacter africanus subsp. africanus: Desaf_0209
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Entry
Desaf_0209 CDS
T01662
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
daf
Desulfocurvibacter africanus subsp. africanus
Pathway
daf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desaf_0209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daf03019
]
Desaf_0209
03400 DNA repair and recombination proteins [BR:
daf03400
]
Desaf_0209
Enzymes [BR:
daf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Desaf_0209
Messenger RNA biogenesis [BR:
daf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desaf_0209
DNA repair and recombination proteins [BR:
daf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Desaf_0209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
HTH_40
RecQ_Zn_bind
DGOK
Motif
Other DBs
NCBI-ProteinID:
EGJ48569
UniProt:
F3YVH7
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All DBs
Position
226543..228852
Genome browser
AA seq
769 aa
AA seq
DB search
MQGALGAPLRFAEPTSPRMPKHPHATTPAEILRTIFGYASFQGRQEEIITHVADGGDAVV
LMPTGGGKSLCYQIPALLRPGLGVVVSPLIALMQDQVGGLTQMGVAAACLNSALTPSAAR
SVIEDMLAGRLDLLYVAPERAVRPDFLRLLGQVELALFAIDEAHCVSQWGHDFRPEYREL
AVLGRAFPGVPRIALTATADEPTRRDILAGLDLHGAALYCASFDRPNLRYIVKPKDHPFR
QLMEFIRREHPGEAGIVYCLSRRKVEETAARLAKEGLRALPYHAGLPSSERERNMDAFMR
EEGLIMVATVAFGMGVDKPNVRFVAHLDPPRSLEAYHQETGRAGRDGLPADAWMVYGLQD
IVAMRAMLRGEEAQVSGSQDHDGLAHKRLEARKLDALLGYCETTACRRTVLLGYFDENFQ
GPCNSCDCCLEPPETFEGTVVAQKALSNVFRTGQRFGAGHLTDVLLGRASPRVLELGHDR
LSTFGIGTELDRDGWMSVHRQLAASGYLSADPDSYGGLRLTPKSWDVLKNGRSVSFRRDA
KRSARRATRAGGTGLPATGEARGLLVKLKELRMALAREHGVPPYAIFPDRTLLDFVRLRP
ADQRALCAAFGVGERKAERFGPAFLALLEAYAIEHGRPTPAPEPEPETTGNGDEPSANLG
TRRRGDSARESLELFRELGSVEAVAARRALKASTIWSHMTDAVAHDELDGLAVSGLQSEE
YECLLETLRLFAREGFLGLKPAHEALGEVYSYELLRLVWADIGRTANLE
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggggcgcttggcgcccctttacgttttgccgagccgacaagcccacgcatgcca
aagcatccccacgcgaccacaccggccgagatcctgcgcacgatcttcggctacgcatct
ttccagggccgacaggaagagatcatcacgcacgtggccgacggcggcgatgccgtcgtg
ctcatgcccacgggcggcggcaagtctctgtgctaccagatcccggccctgttgcggccg
ggcctgggcgtggtggtatcgccgcttatcgcgctcatgcaggatcaggtgggcggcctc
acgcagatgggcgtggccgcggcctgcctcaattcggccctgacgccctccgcagcccgc
agtgtgatcgaggacatgctcgccggccggctggatctgctctacgtcgcgccggagcgg
gccgtgcggcccgacttcttgcggctgctcggccaggtcgagctggccctgttcgccatc
gacgaggcccactgcgtatcccagtggggtcacgacttccggcccgagtaccgcgagctg
gccgttctgggccgggcttttcccggcgtgccgcgcatcgccctcacggccacggccgac
gagcccaccaggcgggacatcctggctggactggacctgcatggcgcggccttgtactgc
gccagcttcgatcgccccaacctgcgctacatcgtgaagcccaaggaccaccctttccgg
cagctcatggaattcatccgccgcgagcatcccggcgaggcaggcatcgtctactgcctg
agccgccgtaaggtcgaggagaccgctgcgcgcctggcgaaggaagggctgcgcgccctg
ccctaccatgcaggtttgccctcgtcggaacgtgagcgcaacatggatgccttcatgcgc
gaagaaggcctgatcatggttgccaccgtggccttcggcatgggtgtggacaagcccaac
gtgcgtttcgtggctcacctggacccgccgcgcagcctggaggcctaccaccaggaaaca
ggccgcgcgggtcgcgacggattgcctgccgatgcctggatggtctacggcctgcaggat
atcgtggccatgcgcgccatgctgcgcggggaggaggcgcaggtctcgggcagtcaggat
cacgacggcctggcacacaagcgcctggaagcgcgcaagctggatgcgctgctgggctat
tgcgaaaccacggcctgccggcgcacggttctgctcggctactttgacgaaaacttccaa
ggcccgtgcaacagctgcgactgctgcctggagccgcccgagaccttcgagggcacggtg
gtggctcagaaagccttgtccaacgtcttccgcacgggccagcgcttcggtgcgggccac
ctgacggacgtactcctgggccgggcctcgccgcgcgtgctggagcttggccacgaccgc
ttgagcaccttcggcatcggcaccgagctggaccgcgacggctggatgtccgtgcatcgg
caactcgccgcctccggctacctttccgccgatcccgacagctatggtggattgcgcctg
actcccaagagttgggatgtactaaagaacggcagatcggtgagcttccggcgcgacgct
aagcgttcagcacgccgcgcaacgcgtgcaggcggtacgggtttgccggccacaggtgag
gctcgcggcttgctggtaaagctcaaggagctgcgcatggccctggcccgcgagcatggc
gtgccgccttatgccatttttccggaccgcaccttgctggatttcgtgcgcctgcggccc
gcggatcagcgcgccttgtgcgcggccttcggtgtgggcgaacgcaaggccgagcggttc
ggcccggctttcctggccttgctcgaagcttacgccattgagcacggcaggcccacgcca
gcacctgaacccgagccagagactaccggcaacggcgacgaaccctcggccaacctgggc
actcgccggcgcggggactcggctcgcgaaagcctggagctgttccgcgagctgggcagc
gtggaagccgtggctgcccggcgtgcgctgaaggcctccacgatctggtcgcatatgacc
gatgccgtggcccatgacgaattggacggattggccgtatccggactgcagtcggaagaa
tatgagtgcctgttggaaaccttgcgcctgttcgcacgggaaggctttctgggcctcaag
ccggctcatgaagccttgggagaagtctattcctacgagttactgcgcctggtctgggcc
gatatcggccgcacggccaacttggagtag
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