Desulfocurvibacter africanus subsp. africanus: Desaf_0221
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Entry
Desaf_0221 CDS
T01662
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
daf
Desulfocurvibacter africanus subsp. africanus
Pathway
daf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
daf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Desaf_0221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
daf03021
]
Desaf_0221
03400 DNA repair and recombination proteins [BR:
daf03400
]
Desaf_0221
Enzymes [BR:
daf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Desaf_0221
Transcription machinery [BR:
daf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Desaf_0221
DNA repair and recombination proteins [BR:
daf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Desaf_0221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
EGJ48579
UniProt:
F3YTX3
LinkDB
All DBs
Position
complement(238269..242426)
Genome browser
AA seq
1385 aa
AA seq
DB search
MTLDDLFAFRQTSATSIPAQGIKAMKISIASPEKIREWSFGEVKKPETINYRTFKPERDG
LFCAKIFGPVKDYECNCGKYKRMKHRGIVCEKCGVEVIASKVRRERMGHIELAAPVAHIW
FLKTLPSKIGTLLDMTMADLEKVLYFDSYVVMDPRDTNLSKYQVISEDQYLQVIDHYGEE
AISVGMGAEAVRALLEELDLEKMRVELREESQTTKSQTKKKKLTKRLKIVEAFSDSGNKP
EWMIMEVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELGAPDIIIRN
EKRMLQEAVDALFDNGRRGRAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSV
IVVGPKLKLHQCGLPKKMALELFKPFIYSKLEERGYASTIKSAKKMVEREELVVWDILEE
VVREYPIMLNRAPTLHRLGIQSFEPLLVEGKAIRLHPLVCSAYNADFDGDQMAVHVPLSV
EAQIECRVLMMSTNNILSPSNGSPIINPSQDIVLGLYYLTVERSFSRGEGKIFADQMEVI
AAVDNEVVDLHSRIKVRIDGKLHDTTPGRVIVSEILPAEMTFEMGNVVLNKKNIARLVSE
AYRTSGIKATVILCDRLKDMGYEYATRAGVTIGVKDLSIPAKKAPLLQASHDEVDDIERQ
YQEGIITRTEKYNKVVDVWTKCTNDVAKEMMREISIDILVDPKTGKKEANSSFNPIYMMV
TSGARGNQDQMRQLAGMRGLMAKPSGEIIETPITSCFREGLSVLQYFNSTHGARKGLADT
ALKTANSGYLTRRLVDVVQDVIISEIDCGTVDGLEVSHLIKGGDIKQKLSERVLGRVTMF
DIYDDEKGELIIPANTVIDEQVALKIDDAALNSMTIRSGLTCASSHGVCAMCYGRDLARG
RLVNVGETVGIIAAQSIGEPGTQLTMRTFHIGGTASREIERSSVESGHNGRAVLHRVKTV
KNAEGNWMVLNKSGQLSIVDEQGREREKYLLPSGAKLFVESESLIKKGQMLAEWDPFNEP
FVSDVEGTVRFSDIVEGKTYQEKMDEATKRTTQTIIEYRSTNFKPAISIVDEEGRVKVRP
DSMVNATFQLPVGAIIMIRDGDFVKAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPK
DLAVVSEIDGVVSFGPDTKGKRKIIVTPETGDSKEYLIPKGKHITVSEGDFVESGELLTE
GYPELHDILKIKGEKVLARYLVEEIQDVYRFQGVSIDDKHIEIIVRQMLKKVSVTDPGDT
TFLAGEQVDKHKFMEENQQCIADGRKAAVAEPLVLGITQASLTTDSFISAASFQETTKVL
TEASLQGKEDALRGLKENVIVGRLIPAGTGYRRYMEAEIDVPDQAERPDKFLEELDEPLG
VADRE
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgacgttggatgatctgttcgcattccgccagacctcggccacgagcattcccgcccag
ggaataaaggccatgaagatctccatcgcgtcgcccgagaagatccgcgagtggtccttt
ggcgaggtgaagaagccggagaccatcaactaccggacattcaagccggagcgcgatggc
ctcttctgcgccaagatctttgggccggtgaaggactacgagtgcaattgcggcaagtac
aagcgcatgaagcaccgtggcatcgtttgcgagaagtgcggcgttgaggtcatcgcatcc
aaggtgcggcgagagcgcatgggccacatcgagttggccgcgcccgtggcgcacatctgg
ttcctcaagaccttgccctccaagatcggcaccctgctcgatatgaccatggccgatctt
gagaaggtgctttactttgattcctatgtggtcatggatcctcgggatacgaacctgtcc
aagtatcaggtcatttccgaggaccagtaccttcaggtcatcgaccactacggcgaggaa
gccatcagcgtgggcatgggcgccgaggccgtgcgcgctctgctggaagagctggacctg
gagaagatgcgagttgaactgcgcgaagaatcgcagaccaccaagtcgcagaccaagaag
aagaagctgaccaagcggctcaagatcgtggaggcgttcagcgattcgggcaacaagccc
gagtggatgatcatggaagtcgttccggtcatcccgcccgaactgcggcccctggtgccg
ctggacggcggccgcttcgccacctccgacctgaacgatttgtaccgcagggttatcaac
cgtaacaaccgcctgaaaaggctgctggagctgggcgcgccggatatcatcatccgcaac
gaaaagcgcatgctccaggaggcggtggacgccctgttcgacaacggccgccgcggccgg
gccatcaccggcaccaacggccgcccgctcaagtccctgtcggacatgatcaagggtaag
cagggccgcttccgccagaacctgctcggcaagcgcgtggactactccggccgttcggtc
atcgtggtgggccccaagctcaagctgcaccagtgcggcttgcccaagaagatggccctg
gagctgttcaagcccttcatctactccaagcttgaggagcggggctacgcctcgaccatc
aagagcgcgaagaagatggttgagcgcgaagagctggtggtctgggacatcctggaagag
gtcgtgcgcgagtatcccatcatgctcaaccgcgcgccgaccctgcaccgcctgggcatc
cagtccttcgaaccgctgctggtcgagggcaaggccatccgtctgcacccgctggtctgc
tcggcgtacaacgccgacttcgacggtgaccagatggccgtgcacgttccgctgtcagtg
gaggcgcagatcgagtgccgcgtgcttatgatgagcaccaacaacattctctcgccctcc
aacggttcgcccatcatcaacccgagccaggacatagtgctcggtctgtattacctgacc
gtggagcgctccttcagcaggggcgagggaaagatcttcgccgatcagatggaggtcatc
gcggctgtcgataacgaagtcgtggacctgcactcgcgcatcaaggtgcgtatcgacggc
aagctgcacgacaccacgcctggccgcgtgatcgtgagcgagatcctgcccgcggagatg
accttcgagatgggcaacgtggtgctcaacaagaagaacatcgcccgtctggtcagcgag
gcttaccgcacctccggcatcaaagccacggtcatcctctgtgaccgcctcaaggacatg
ggttacgagtacgcgactcgcgccggcgtgaccatcggcgtcaaggacctgagcatcccg
gcgaagaaagctccgctgttgcaggcctcccatgatgaggtggatgatatcgagcgccag
taccaggaaggcatcatcacgcgtactgagaagtacaacaaggtggtggacgtctggacc
aagtgcaccaacgatgtggccaaggagatgatgagagagatctccatcgacatcctggtg
gaccccaagaccgggaagaaggaagccaactccagcttcaacccgatctatatgatggta
acctcgggcgcccgaggtaaccaggaccagatgcgccagcttgccggcatgcgcggcctc
atggccaagccttcgggcgagatcatcgagacgcccatcacgagctgtttccgcgagggc
ctctcggttctgcagtacttcaactccacgcacggcgcgcgaaagggcttggccgatacg
gcgctcaagaccgcgaactccggctacctgacccgtcgtctggtggatgtcgtgcaggat
gtcatcatcagcgagatagactgcggcacagtcgacggcctggaggtctcgcacctcatc
aagggcggcgacatcaagcagaagctgtccgagcgcgtgcttggccgcgtgaccatgttc
gacatctacgatgacgaaaagggcgagttgatcattccagccaacacggtcatcgacgag
caggtggccctgaagatcgacgatgccgcgctcaactccatgaccatccgctcgggtctg
acctgcgccagcagccatggcgtgtgcgccatgtgctacggccgcgacctggcccgcgga
cgtctggtcaacgttggtgaaactgtcggaatcatcgccgcccagtccatcggcgagccc
ggcacgcagttgaccatgcgtacgttccacatcggcggcacggcaagccgcgaaatcgag
cgttccagcgtcgagtccggccataacggccgtgccgtgctgcaccgcgtgaagacggtc
aagaacgccgagggcaactggatggtgctcaacaagagcggccagctgtcaattgtggac
gagcagggccgcgagcgtgagaagtacctgttgccttccggcgccaagctgttcgtggag
tccgagtcgctgatcaagaagggccagatgctggccgagtgggaccccttcaacgaaccc
ttcgtgtccgacgtcgagggcacggtgcgcttctcggatatcgtggaaggcaagacctac
caagagaagatggacgaggccaccaagcgcacgacgcagaccatcatcgagtaccgctcc
accaacttcaagcccgcgatctccatcgtggacgaagagggcagggtcaaggtgcggccc
gacagcatggtcaacgccaccttccagttgccggtgggcgctatcatcatgatccgcgac
ggcgacttcgtgaaggctggcgacatcatagcgcgcaagccccgcgaaacgtcaaagacc
aaggacatcgtgggtggtctcccgcgcgtggccgagctgttcgaagttcgcaagcccaag
gatctggccgtggtctcggagatcgacggcgtggtttccttcggtccggacaccaagggc
aaacgcaagatcatcgtcacgcccgagaccggcgactccaaggaatacctcatccccaag
ggcaagcacatcaccgtgagcgagggcgacttcgtggaatcgggcgagctgcttaccgag
ggctatcccgaactgcacgacatcctcaagatcaagggtgagaaggttctggcccgctac
ctggtggaagagatccaggacgtgtaccgcttccagggcgtgagcatcgacgataagcac
atcgagatcatcgtgcgccagatgctcaagaaggtcagtgtcaccgatccgggcgacacg
acattcctggccggcgagcaggtggacaagcacaagttcatggaggagaaccagcagtgc
atcgctgacggccgcaaggccgccgtggccgagcctctggtgctgggcattacccaggcc
tccttgacaaccgactcgttcatctccgcggcttccttccaggagaccaccaaggtgctt
accgaggcgtcgctccagggcaaggaggacgcactgcgcggtctcaaggaaaacgtcatc
gtgggtcggctcatcccggccggcaccggataccgccgctacatggaggccgagatcgat
gtgcccgaccaggccgagcgtcccgacaagttcctggaggaactggacgaacccctgggc
gtggcggatcgcgaatag
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integrated database retrieval system
