Desulfocurvibacter africanus subsp. africanus: Desaf_0460
Help
Entry
Desaf_0460 CDS
T01662
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
daf
Desulfocurvibacter africanus subsp. africanus
Pathway
daf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desaf_0460
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daf03019
]
Desaf_0460
03009 Ribosome biogenesis [BR:
daf03009
]
Desaf_0460
Enzymes [BR:
daf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Desaf_0460
Messenger RNA biogenesis [BR:
daf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desaf_0460
Ribosome biogenesis [BR:
daf03009
]
Prokaryotic type
rRNA processing factors
Desaf_0460
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
EGJ48814
UniProt:
F3YUD2
LinkDB
All DBs
Position
511407..512864
Genome browser
AA seq
485 aa
AA seq
DB search
MASAKKRKMFISVLPGEQIELVLAEDAKIQEYYVELLHQAKTKGNIYKGVIHNVDAGLQA
AFINYGAKKNGFLQIDEVHPEYYQGGYQIPKGSRFPPLQSVLKPGQELLVQVVKEPTGSK
GAFLTTYLSLPGRYFVLTPGREQLGISRKIEDEEERKRLKELVESMQPGEGLGLIVRTVS
SAETKTNLDKDVQYLKRLWKEIRKRGTTADTPSLIYQEMELSSRAVRDYLTADVSEIWVD
DQETATQVTELVSIVFPRRQSMVKVHTEHELSLFDRFNLTRQLDQIYSRTVTLPSGGQIV
FDHAEALTAIDINSGRIGGKKSFKDLALKSNLEAAEEIARQLRLRDIGGQIVVDFIEMKD
KKHVKEVEKIMRTAIKNDRARTDVGRISRFGLMELVRQRMGVSAVSQSHELCPCCQGYGL
RRNMEWQAMQALKEIYRKLRGHKSGEPFEYIAASAEVARHLLNDKRGMIHELEDKFGAIV
RISWV
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggcatcagcgaaaaaacgcaaaatgttcatcagcgtcctgcccggcgagcagatcgag
ctcgtgctggcggaggacgccaagatccaggagtattacgtcgagcttctgcaccaggcc
aagaccaagggcaatatctataagggcgtcatccacaacgtcgatgcaggcctgcaggcc
gcgttcatcaattacggcgccaaaaagaacggctttctgcagatcgacgaggtccatccc
gaatactatcagggcggctaccagattcccaagggcagccgcttcccccctctccagtcc
gtactgaagcccggccaggaactgctggtgcaggtggtcaaggagcccacgggctccaag
ggcgccttcctgacgacctacctgtcccttccgggccgctacttcgtgctcacccccggc
cgcgagcagctgggcatctcgcgcaagatcgaggacgaggaagagcgcaagcgcctcaag
gagctggtcgagtccatgcagcccggcgagggccttggtcttatcgtgcgcacggtcagc
tcggccgagaccaagaccaacctggacaaggacgtgcagtacctgaagcgcctgtggaag
gagatccgcaagcgaggcaccacggccgacacgccctcgctcatctaccaggagatggaa
ctttcctcgcgggccgtgcgcgactatctcaccgccgacgtgtccgagatatgggtcgat
gaccaggagaccgccacccaggtcaccgaactggtcagcatcgtcttccccaggcggcag
agcatggtcaaggtgcacacggagcacgagctttcgcttttcgaccgctttaacctcacg
cgccagctcgaccagatctacagccgcacggtgaccctgccctcgggcggccagatcgtc
ttcgaccacgccgaggctctcacggccatcgacatcaactccggccgcatcggcggcaag
aagagcttcaaggacctggctctcaagagcaacctggaagcggccgaagagatcgcccga
cagctcaggttgcgagacatcggcggccagatcgtggtagacttcatcgagatgaaggac
aagaagcacgtcaaggaagtcgagaagatcatgcgcacggccatcaagaacgaccgcgcg
cgaaccgacgtgggccgcatctcgcgcttcggactcatggaactggtgcgccagcgcatg
ggcgtgtccgccgtgtcccagagccacgaactctgcccctgctgccagggctacggcctg
cgccgcaacatggaatggcaggccatgcaggcactgaaggaaatctaccgcaagctgcgc
ggccacaagtccggcgagccgttcgagtacatcgcggcctcggccgaggtggcccgccac
ctgctcaacgacaagcgcggcatgatccatgagctggaggacaagttcggagcgatcgtg
cgcattagctgggtctag
DBGET
integrated database retrieval system
