Desulfocurvibacter africanus subsp. africanus: Desaf_1589
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Entry
Desaf_1589 CDS
T01662
Name
(GenBank) 2,3 cyclic-nucleotide 2-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
daf
Desulfocurvibacter africanus subsp. africanus
Pathway
daf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desaf_1589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daf03019
]
Desaf_1589
Messenger RNA biogenesis [BR:
daf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desaf_1589
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
KH_2
Gly-zipper_Omp
Motif
Other DBs
NCBI-ProteinID:
EGJ49925
UniProt:
F3Z127
LinkDB
All DBs
Position
1767046..1768626
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AA seq
526 aa
AA seq
DB search
MSFLSILLILVGAAIGAAAGYVLHKAIESRRLRDAKDLAERILDEARKEAQASKKESLLQ
AQDEIYNQKKELEGEYKERERQLKSKEGKLADKEVKLAEKEERLESKLEKLAQKEISVID
FEKKLTKQERLLADRDEVIVQREEEQARKLEEISGLTQEEARSRIMQDIEDKTRHEAAKM
VRTIEMEAREMADKKAKEILALSIQRYAGDYVAEQTVTAVSLPSEDMKGRIIGREGRNIR
ALEAATGVDLIIDDTPETVILSAYSPLRREIAKQALERLITDGRIHPARIEDIVKKVEQE
MEVKLREIGEQATFDVAVHGIHPDIIRLLGQLHYRTSFSQNVLQHSLEVASLCGIMAAEL
GLDEKKAKRAGLLHDIGKAVDHEVEGPHAIIGADLAKKYAESKEIIHAIAAHHEDVPPKS
ILAVLVQAADSLSGARPGARKELLENYVKRLEDLENVAKDVEGVSKAFAIQAGREIRVMV
DADKVTDDNTYLLCKDIAHKIEENLTYPGQIKVTVIREKRAVEYAK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgagttttttatctattctactgatcctggtcggagcagccatcggcgctgcggctggt
tatgtcctgcacaaggctatagagtccaggcggttgcgtgatgccaaggatttggctgag
cgaatcctcgacgaagctcgcaaggaggcccaggcctccaagaaggaaagcctgctccaa
gctcaggatgagatctataatcagaagaaggagctggagggcgagtacaaggagcgcgaa
cggcagctcaagagcaaggaaggcaagctcgccgataaagaggtcaagctcgccgagaag
gaagagcggctggagagcaagctcgaaaagctggcccagaaggaaatcagcgttattgat
ttcgagaagaagctcaccaagcaggagcgcctgctggcggatcgggacgaagtcatcgtg
cagcgggaggaggaacaggctcgcaagctcgaggagatttccggcctgacccaggaagag
gcccgctcgcgcatcatgcaggatatcgaggacaagactcgtcacgaggcggccaagatg
gtccgcaccatcgagatggaagctcgcgagatggccgacaagaaggccaaggaaatcctg
gcgctttccatacagcgttacgccggcgactacgtggccgagcagacggtcacggccgtg
agcctgccttcggaggacatgaaggggcgcatcatcggccgcgaggggcgcaacatccgc
gctctggaggccgccactggcgtggacctcatcatcgacgacacgcccgagaccgtcatc
ctgtcggcctacagcccgctgcggcgcgaaatcgccaagcaggctctggagcggctcatc
accgacggccgcatccatccggcgcgcatcgaggatatcgtcaagaaggtcgagcaggag
atggaagtcaagctgcgcgaaatcggcgagcaggccaccttcgatgtagccgtgcacggc
atccatcccgacatcattcgcctgctgggccagttgcactaccgcaccagcttctcgcag
aacgtgctgcagcattcgcttgaagtggcctcgctgtgcggcatcatggccgccgagttg
ggcctggacgagaagaaggccaagcgcgctggcttgctgcacgatatcggcaaggccgtg
gaccacgaagtcgagggcccgcatgccatcatcggtgctgacctggccaagaagtacgcc
gagtccaaggagatcattcacgccatcgccgcgcaccacgaggacgttccgcccaagtcc
attctggccgtgctcgtgcaggcggcggactccttgtccggagcccgtcccggtgcgcgc
aaggaactgctggagaattacgtcaagcggcttgaggacctggagaacgtggccaaggac
gtggaaggcgtgtccaaggcgttcgccatccaggctggccgcgagatccgggtcatggtc
gatgcggacaaggtgaccgacgacaacacgtacctgctctgtaaggacatagctcataag
atcgaggagaatctgacctatccaggccagatcaaggtcacggtcatccgcgagaaacga
gccgtggagtacgccaagtag
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