Desulfocurvibacter africanus subsp. africanus: Desaf_3639
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Entry
Desaf_3639 CDS
T01662
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
daf
Desulfocurvibacter africanus subsp. africanus
Pathway
daf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desaf_3639
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daf03019
]
Desaf_3639
Enzymes [BR:
daf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desaf_3639
Messenger RNA biogenesis [BR:
daf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desaf_3639
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
AAA_22
Motif
Other DBs
NCBI-ProteinID:
EGJ51916
UniProt:
F3YYU0
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All DBs
Position
4010257..4011810
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AA seq
517 aa
AA seq
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MSFDSFSLDQRIMAGILAAGYTTPTPIQTRAIPAVLAGKDVMGLAQTGTGKTAAFVLPLL
QRLLNDNAPTRGPIRVLVLAPTRELAVQIHQSFFGLGKQTGIRSAVVIGGVGAMPQIKAL
RQATVAVACPGRLVDLMNQGAVDLSKVSALVLDEADRMLDMGFLPDVRKVMAKLPRQRQN
MLFSATMPAEIRSLAESGLRDPVTVQVSNTAPAATVSHALYPVAGSRKQDLLEKLLNDLG
KNSALVFTRTKHRAKGLAQKLAGKGFSVTSLQGNLSQGRRQEAMDGFRNGKYRVMVATDI
AARGIDCERVSLVVNFDLPDTAEAYTHRIGRTGRAERNGEAVSLVAPEDESQVKFIERSL
NLRIERKRLDGFSDSAARAPQYDSQPRTQQSRRPGPAPRKAIDSAATKSLLPVRSGAGAT
SRGDNPTSARPKAAASAGKPRQHSASANGGASARDAQPRSRAAGQSQQAEGPDGDRWMQV
WGKAQPKQLLGATGHRGQDDRRASAGRTPRNEGRSAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
gtgagttttgattccttctcccttgaccaacgcatcatggccggcatcctcgccgccggt
tacacaaccccgactcccattcagacccgcgccatccccgctgtcctagcgggcaaggac
gtcatgggcctggcccagaccggcacaggcaaaaccgctgccttcgtgcttcctctcctg
cagcggctgctgaatgacaacgcgcccacgcgcggtcccatccgcgtgctggtgctcgcc
ccgacccgtgaactggccgtgcagatacaccaatccttcttcggcctgggcaagcagacc
ggcatacgcagcgccgtggtcataggcggcgtgggcgccatgccccagatcaaggccttg
cgccaagccacggtggccgtggcctgccccggacgccttgtggacctcatgaaccagggc
gcggtggatctctccaaggtctccgccctcgtgctggacgaagccgaccgcatgctggac
atgggcttcctgcccgatgtgcgcaaggtcatggccaagctgccgcgccagcgccagaac
atgctcttctcggccaccatgcccgcggaaatccgttccctggccgaatcaggactgcgc
gatcccgtcacggttcaggtgtccaacaccgcgcccgccgccacggtgagccatgcgctc
tatcccgtggccggcagccgcaagcaggacctgctggaaaagctcctcaacgacctgggc
aagaattccgccctggtcttcacgcgcaccaagcaccgcgccaagggcctggcccagaag
ctggccggcaagggcttctccgtcacgtcgctgcagggcaacctgtcccagggccgccgt
caagaggccatggatgggttccgcaacggcaaataccgggtcatggtggccacggacatc
gctgcccgcggcatcgattgcgagcgcgtgagcctggtggtcaatttcgatctgcccgac
acggccgaagcctacacgcaccgcataggccgcacgggccgcgccgagcgcaatggcgag
gctgtgagcctggtcgcgcccgaagacgagtctcaggtcaagttcatcgaacgcagcctg
aacctgcgcatcgaacgcaaacgtctggacggcttttccgatagcgcggctcgcgccccg
cagtatgacagccagccgcgcacgcagcagagccgcaggcccggacccgctccccgcaag
gccatcgactcggcggcaaccaaaagcttgctgccggtccgttccggagcaggcgccacc
agccggggcgataatcccacctcggccaggcccaaagccgccgcttccgctggcaagccc
aggcagcattccgcaagcgccaatggcggcgcaagcgccagggatgcacagccccgcagc
cgcgctgccggtcagtcccagcaggccgaaggccccgatggggatcgctggatgcaggtc
tggggcaaggcccagcccaagcagcttctgggggcgacgggccatcgcggccaggacgac
cggcgggccagtgccggccgcaccccccgtaacgaaggacgttctgcgaagtag
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