Devosia algicola: PSQ19_04105
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Entry
PSQ19_04105 CDS
T09919
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
dag
Devosia algicola
Brite
KEGG Orthology (KO) [BR:
dag00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dag03016
]
PSQ19_04105 (rnd)
Enzymes [BR:
dag01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
PSQ19_04105 (rnd)
Transfer RNA biogenesis [BR:
dag03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
PSQ19_04105 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-ProteinID:
WDR03336
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All DBs
Position
776594..777928
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AA seq
444 aa
AA seq
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MELMTTTDALVAFCDQAAKFDFVTVDTEFLRETTYWPKLCLIQAATDDEVVLIDPLSPTM
DLSPFFALLSNPNVAKVFHAARQDIEIFVKLTGSVPLNIFDTQVAASVCGFGDSVSYDNL
VRSITSVTLDKSSRFTDWSARPLSEKQRLYAAADVTHLRDVYRELRTQVAATRRSGWVDD
ELTVLRSIDTYVVQPDRAWERLKLKINRPRDLAALKVLAAWREKRAQDSDQPRSRILKDD
VLFELSMQRPLNPDAFERLRAVPRGFGRSAAASEIIGLLKTVEDISKEDLPKLPERYRGP
SPKGAIGDLVRVLLKSVAEQNGVAARIIATSDDIDALVLDDEADVAPLRGWRRKALWRKR
LWPLSMAELACVPRARALSNLRSSLTWLPRTPPPNSVRLPPEPRFACSPTRPRTGQDGCA
DVRRQETPDQPAATGPTLQPARQI
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atggaattgatgacaacgaccgacgcgctggtggcattttgcgaccaagctgccaagttt
gatttcgttacggttgacacagaattcttgcgagaaaccacctattggccaaagctttgc
ctgatacaggcggcgaccgatgatgaagtggtgttgatcgatccgctatcaccgaccatg
gacctttcgcccttttttgcgcttctgtccaatccgaacgtggctaaggttttccacgcg
gcccgccaggacattgaaatatttgttaaactgaccggcagcgtgccgctcaatattttc
gatacacaggttgcggccagcgtctgtggttttggcgacagcgtatcgtacgacaatctg
gtgcgctcgataacgtctgtcacactggataagtcatcgcgatttaccgattggtccgcc
cgccctctgtccgaaaagcaacggctgtatgcggctgcggacgtaactcaccttcgcgac
gtctatcgggaactgcgtacgcaggtcgccgcaacgcgtcgctcgggttgggtcgacgac
gaattgacggtgttgcgaagcatagacacttatgttgtccagcctgaccgggcatgggaa
cggctaaagctgaagatcaatcgcccccgcgatctggcagccctcaaagtactcgcggcg
tggcgcgaaaaacgcgctcaagatagcgaccagccacgcagccgcattttgaaagacgat
gtcctgtttgaattgtcgatgcagcggccactaaatcccgacgcgtttgaacgtctgcgc
gccgtgccacgcggtttcgggcgcagcgccgccgcgtccgaaataattggactgctcaag
actgtcgaagacatcagcaaggaagacttgccaaaactgccagagcgttatcgtggtcca
tcgcccaagggcgccatcggggatctggttcgcgtattgctcaaatcagtcgctgaacag
aacggcgttgctgcccgcataattgcgacatccgacgacatcgacgcacttgtccttgac
gacgaggccgatgttgcccctctgcgggggtggcgacgcaaggctctttggcgaaaaagg
ctctggccattaagcatggccgaattggcttgtgtgccacgcgcaagggcattgtcgaat
ttgagatcgagcctgacgtggttgcccaggacgccgccgccgaatagcgttagattgcca
cctgaaccgaggtttgcttgtagcccgacacgcccccgaactggtcaagacggttgcgca
gatgttcgccgtcaagaaacaccagatcagccggcagcaacaggaccaacactccagcct
gcacgtcaaatttga
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