Devosia algicola: PSQ19_05670
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Entry
PSQ19_05670 CDS
T09919
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dag
Devosia algicola
Pathway
dag03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dag00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PSQ19_05670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dag03019
]
PSQ19_05670
03009 Ribosome biogenesis [BR:
dag03009
]
PSQ19_05670
Enzymes [BR:
dag01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PSQ19_05670
Messenger RNA biogenesis [BR:
dag03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PSQ19_05670
Ribosome biogenesis [BR:
dag03009
]
Prokaryotic type
rRNA helicases
PSQ19_05670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
WDR03574
UniProt:
A0ABY7YQP4
LinkDB
All DBs
Position
complement(1084799..1086700)
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AA seq
633 aa
AA seq
DB search
MSLPETIVVPLARAMAAKGYKNLTEVQSAILAGDAQGQDLLVSAQTGSGKTVAFGMAIAP
TLLEGADRFTEQGAPLALIIAPTRELALQVQRELDWLYAETGAKTASCVGGMDMRTERRA
LERGAQIVVGTPGRLRDHITKGVLDTSALRAVVLDEADEMLDLGFREDLEFILDAAPADR
RTLLFSATVPRQIANLAKTFQKDALRIAATSAASQHADIDYKLVLIPAAERENAIINTLL
YFDSANTIVFASTREGVKHLSARLHNRGFDVVTLSGELSQSERTNALQSMRDGRARICVA
TDVAARGIDLPNLDLVIHADMPTNPDTLLHRSGRTGRAGRKGTCVLIVPMHRRNAVQRVL
KMAKLGVAYMAAPTSNDIEARYRESILNDASLSKTPSEDETAIVAELMALHSPQAIAAAY
LRQQIAARPAPEELSENMAPDKPGPSDPREKARFETGVWFKVSVGRKHRAEPRWLLPLIC
KAGGVTKAAIGSIRIFDTESHFEVSTPKAEAFAAAIARNGSGERGVTISAIDGDSPPSGK
RTFPKSPRRPEGPVERYDPTASRPERADRAARYGAGPSDVDVVNPRAEKINPKDKGKPKW
KDKTKPATASAPGPKKAKVAKKKDHKTKRKPQY
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
gtgtccctgcctgaaaccatcgtcgtcccacttgctcgcgccatggcggccaagggttat
aaaaatctgactgaagttcagagcgccattctggctggggacgcgcagggtcaggatttg
ctggtatctgcgcagactggatcgggcaagaccgtcgcctttggtatggccattgccccg
accttactggaaggcgctgatcggttcaccgagcagggcgcgccgttggccctgatcatt
gcaccgactcgtgaactggcgctgcaggttcaacgcgaactcgattggctttatgccgag
accggcgccaagaccgcctcgtgtgtcggcggtatggacatgcgcaccgagcgcagggcg
ctggaacgtggtgcgcagatcgtcgtgggcacgccggggcgtctgcgtgatcatattacc
aagggtgtgcttgatacttcggcgttgcgcgccgttgtgctcgacgaggccgatgaaatg
ctggaccttgggtttcgcgaggaccttgagttcattctggatgcggcgccggctgatcgg
cgcacgctactgttttctgcgactgtgccgcgccagatcgccaatctggccaagacattc
cagaaggatgcgctgcgtattgcagcaacaagtgcggccagccagcatgccgacattgac
tacaagcttgtgttgatccccgctgcggagcgggaaaacgccatcatcaatacgctactg
tatttcgatagtgccaacaccattgtgtttgcctcaacccgtgaaggcgtgaagcatttg
tcggcgcgactgcataatcgcggctttgatgtggtgacgctgtcgggggagttgagccag
tcggagcgcaccaatgcgctgcagtcgatgcgcgacggacgggcacgtatttgcgtggca
acggacgttgcggcgcgtggcattgacctgcccaatctcgacctggttattcacgccgat
atgccgaccaatcctgacacgttgctgcaccggtcgggccgaacgggacgggcgggtcgc
aagggcacctgcgtgctgatcgtgccgatgcatcgccgcaatgcggtgcagcgtgtgctc
aaaatggccaagcttggcgttgcctatatggccgctccgaccagtaatgatattgaagcg
cgctatcgtgaaagcattctcaacgatgcttcactcagtaaaacgccgagcgaagatgag
acggccattgtggccgaactgatggcgcttcacagcccccaagccattgcggcggcgtat
ctgcgtcagcagattgcggcgcgaccagcacctgaagaactgtcggaaaacatggcacca
gacaagccggggcccagcgatccaagggaaaaggctcgctttgagaccggggtatggttc
aaggtctcggtcgggcgcaagcaccgggccgagccgcgctggctattgccgctgatctgc
aaggcaggtggggttaccaaagctgcaatcgggtcgattcggatttttgacacggagtcc
catttcgaggtctcaacgcccaaggcggaggcgtttgccgccgcgattgcgcgcaatggg
tccggtgaacgcggtgtcacgatatccgcgattgatggcgacagtccgccgtccggcaaa
cgcactttccccaaatcgccgcgtcgtccggaggggccggttgaacgctatgatccgacg
gcgtcgcgccccgagcgggcagatcgggcggcacggtatggtgcgggcccaagcgatgta
gatgtcgttaatccacgggctgaaaagatcaatcccaaagacaagggcaagcccaagtgg
aaggacaagaccaaaccggcaaccgccagtgcgcccggaccaaaaaaggcaaaagtagcc
aagaagaaggatcacaagaccaagcgcaaaccgcaatattag
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