Deinococcus aetherius: DAETH_10630
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Entry
DAETH_10630 CDS
T08646
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dah
Deinococcus aetherius
Pathway
dah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DAETH_10630 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dah03021
]
DAETH_10630 (rpoC)
03400 DNA repair and recombination proteins [BR:
dah03400
]
DAETH_10630 (rpoC)
Enzymes [BR:
dah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DAETH_10630 (rpoC)
Transcription machinery [BR:
dah03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DAETH_10630 (rpoC)
DNA repair and recombination proteins [BR:
dah03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DAETH_10630 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RPOC_hybrid
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
YqfD
Motif
Other DBs
NCBI-ProteinID:
BDP41094
LinkDB
All DBs
Position
complement(1032159..1036799)
Genome browser
AA seq
1546 aa
AA seq
DB search
MKDFNKVRIAIASPAKIREWSFGEVEKPETINYRTLKPEREGLFDERIFGPMKDYECACG
KYKRQRYEGKVCERCGVEVTSSKVRRYRMGHIDLATPAAHIWYVKDTPSKIGTLLDLSAG
QLEKVLYFSSFLVTQPLNAQKEGRPLKRGELLTDDEYRELRFGRQETYTIPNGQEAVVRD
GEYVTRGQTVGGNVVSKMDGLAQYRFPRRAEIAYAEQVEASLPLPADVLVEQDAFRAGEI
LAELEGDVQITSPVDGTAFLVDLGEDSVLIELRDTVAAPEPVEGEEEQAAPKGDLLARVY
VPHGMNVAVVPGEIVEAGTVLASAEAGNRLRVSRDSRLSAVTFPKKKGDVKATVHWTRRA
EYPINPTMHVLVGDGSEVRARQRVIGAIDKDEEVVAEADGVITLHAPASIIVSKAKVYAY
QDEPLVVNGDRVEPGDELADSGNLRSEISGRIEIDLVRKQVRVIESYDFEAKMGAEAVKE
LLDDLDLDQLEAELGEQMRDSSRHKRAKARKRLEVVRAFKRSGNNPSWMILETVPVMPPD
LRPMVQVDGGRFATSDLNDLYRRLINRNNRLKKLMGQGAPDMIIRNEKRMLQEAVDALID
NGRRGSPVTNPGSDRSLRSLTDLLGGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCG
VPKRMALELFKPFLFKVLEEKGEVTNIKQARKMLERYRDTRDSVWDALEEVIEDKVVLLN
RAPTLHRLGIQAFEPVLVEGQSIQLHPLVCEAFNADFDGDQMAIHVPLSAQAQAEARIQM
LSAHNLLSPANGEPNVKPSRDIILGIFTLTQLRRDNLGAGSAYSSEQDALAALDDGKVAL
NTPITVNGVETSPGRIKYVFSSPDEAIMAVERGGIDYQDHVRIRLNGTVYETSAGRVMFR
RLVQEALGNQAHLVDTLVNLDTAYEKDNLKDMIMGCFKHLGIEATAGLLDALKDSGFKLS
TTSGITIGIDDIVLPPNKAELLAEADEKLKSIEQNYEFGFMTEEERYKQVVQLWNDTTDE
VKNAVFENFSQNYPFNPLWIMSQSGARGNPQQIRQLAGMRGLMARPDGSTIEVPIKASFR
EGLTVLEYFISTHGARKGGADTALRTADSGYLTRKLVDVAHEVVVRDVDCGTTDYTVIPL
GGTDERTGEWRTRKGSEIETSIYGRTLTADVEVAGRTLPAGQMLSLEDVKAITKDARTIG
EVFVRTPLNCRVKAGVCQKCYGYDLSQAKPVSMGEAVGVVAAESIGEPGTQLTMRTFHTG
GVAGGGDITMGLPRVIELFEARKPKNQAVVADRDGVVRIEEEEERYLVRIEAEDEAFSSK
TATKISKGLRLVVRDGDRVEAGQPLTRGAVNPHDLLLYRDTDAAQRYLVEEVQRVYRSQG
VKVHDKHIEVIVRQMLRYVEITDGGDTDLLEGQTVERWEVDGANEALEDGKTPSSWKPVL
LGITKSSLTTKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVILGKLIPAGTGLTTV
REMQVADERTLEKYGEESRSPDSVTGTQRYDDTRPGSTPTVPGYAD
NT seq
4641 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacttcaacaaggtccgcatcgccatcgccagccccgcgaagattcgtgagtgg
tcgttcggtgaggtcgagaagccggaaaccatcaactaccgcaccctcaagcccgagcgc
gaaggtctctttgacgagcgcatcttcgggccgatgaaggactacgagtgcgcctgcggc
aagtacaagcgccagcgctacgagggcaaggtctgcgagcgctgcggcgtcgaggtgacg
agcagcaaggtgcgccgctaccgcatgggtcacatcgacctggcaacccccgccgcgcat
atctggtacgtgaaggacacgccgagcaagatcggtaccctgctcgacctcagcgccgga
caactggagaaagtgctgtacttcagctccttcctggtcacccagcccctcaacgcgcag
aaggaaggccgcccgctcaagcgcggtgagctgctgaccgacgacgagtaccgcgagctg
cgcttcgggcggcaggagacctacaccatccccaacgggcaggaggcggtcgtccgcgac
ggcgagtacgtgacgcgcgggcagaccgtcggcggcaacgtcgtgagtaagatggacggt
ctggcgcagtaccgtttcccccgccgcgccgagatcgcctacgccgagcaggtagaggcc
tcgctgcccctgcccgccgacgtgctggtggagcaggacgccttccgcgccggtgagatc
ttggccgagttggaaggggacgtgcagatcacgagccccgtggacggcaccgccttcctc
gtggacctcggtgaggacagcgtgctcatcgagctgcgcgacaccgtggccgcccccgag
cccgtcgagggcgaggaggaacaggccgctccgaagggcgacctgctggcccgcgtgtac
gtaccgcacggtatgaacgtggccgtcgtccccggcgagatcgtggaggctgggaccgtg
ctggcgagcgccgaggcgggcaaccgtctgcgcgtgagccgcgacagccgcctctcggcc
gtgaccttccccaagaagaagggggacgtgaaggcgaccgtccactggacccgccgcgcc
gagtaccccatcaacccgaccatgcacgtcctcgtgggcgacggcagcgaggtccgcgcg
aggcagcgcgtgatcggcgccatcgacaaggacgaggaggttgtggcggaagcggacggc
gtgatcaccctgcacgcgcccgcgagcatcatcgtctccaaggcgaaggtgtacgcctat
caggacgagcccctcgtcgtgaacggcgaccgggtggagccgggtgacgagctggccgac
agcggcaatctccgcagcgagatcagcgggcgcatcgagatcgacctcgtgcgtaagcag
gttcgcgtgatcgagtcctacgacttcgaggccaagatgggcgccgaggcggtcaaagaa
ctcctcgacgacctcgacctggatcaactggaggccgaactcggcgagcagatgcgggac
tcctcgcgccacaagcgcgccaaggcccgtaagcggctggaggtcgtgcgcgcgttcaag
cgcagcggcaacaacccctcgtggatgatcctggagacggtgccggtcatgccgcccgac
ctgcgcccgatggtgcaggtggacggcgggcgcttcgccacctccgacctcaacgacctg
taccgccgcctgatcaaccgcaacaaccgcctcaagaagctgatgggccagggcgccccc
gacatgatcatccgcaacgagaagcggatgcttcaggaagccgtggacgccttgatcgac
aacgggcggcgcggcagccccgtcaccaaccccggctccgaccgcagcctgcgctcgctg
accgacctgctcggcggcaagcagggccgcttccggcagaacctgctcggcaagcgcgtg
gactactcgggtcgaagcgtgatcgtggtcggcccgcagctcaaactgcaccagtgcggg
gtgccgaagcggatggccctcgaactcttcaagccgttcctgttcaaggtgctcgaagaa
aagggcgaggtcaccaacatcaagcaggcccgcaagatgctggagcgctaccgcgacacc
cgcgactccgtgtgggacgcgctggaagaggtgatcgaggacaaggtggtgctgctcaac
cgcgcgcccaccctgcaccgcctcggcatccaggcgttcgagcccgtgctcgtcgagggt
cagtccatccagcttcacccgctcgtctgtgaggcattcaacgccgacttcgacggcgac
cagatggcgattcacgtcccgctgagcgcgcaggcgcaggcggaagcccgcatccagatg
ctctcggcgcacaatctgctctcgcccgcgaacggcgagcccaacgtcaagcccagccgc
gacatcatcctcggcatcttcacgctgacgcaactccgccgcgacaacctcggcgcgggc
agcgcctattccagcgagcaggacgccctggccgccctcgacgacggcaaggtcgcgctg
aacacgccgatcaccgtgaacggcgtggagacgagccccgggcgcatcaagtacgtcttc
tccagccccgacgaggcgatcatggccgtcgagcgcggcgggatcgactaccaggaccac
gtgcgcatccgcctgaacggcaccgtgtacgagacctccgccggacgcgtgatgttccgc
cgcctcgtgcaggaggcgctgggcaaccaagcgcacctcgtcgacacgctggtcaacctc
gacacggcctacgagaaggacaacctcaaggacatgatcatggggtgcttcaagcatctc
gggatcgaggcgacggcggggctgctcgacgcgctgaaggacagcgggttcaagctctcc
acgacctcgggcatcaccatcggcatcgacgacatcgtgctgccgcccaacaaggcggag
ctgctggcggaggccgacgagaagctcaagtccatcgagcagaactacgagttcggcttc
atgacggaagaggagcggtacaagcaggtcgtgcagctctggaacgacaccaccgacgag
gtgaagaacgcggtcttcgagaacttctcgcagaactaccccttcaacccgctgtggatc
atgtcgcagtccggcgcgcgtggtaacccgcagcagatccgtcagctcgcgggaatgcgc
ggcctgatggcccgcccggacggctccaccatcgaggtgcccatcaaggcgtccttccgc
gagggtctgacggtgctggagtacttcatctccacccacggcgcgcgtaagggcggcgcg
gacacggcgctccgcacggccgactcgggctacctgacccgcaagctggtggacgtggcc
cacgaggtcgtcgtccgcgacgtggactgcggcactaccgactacacggtgattccgctg
ggcgggaccgacgagcgcacgggcgagtggcgcacccgcaagggcagcgagatcgagacg
agcatctatggtcggaccctcaccgccgatgtggaggtcgcggggcgcaccctcccggcg
gggcagatgctcagcctggaggacgtgaaggcgattaccaaggacgcgaggaccatcggc
gaggtgttcgtccgcacaccgctgaattgccgcgtgaaggcgggcgtgtgccagaagtgc
tacggctacgacctctcgcaggccaagcccgtcagcatgggtgaggcggtcggcgtggtc
gccgccgagtccatcggcgagcccggcacgcagctcacgatgcgtaccttccacacgggc
ggtgtggcgggcggcggcgacatcacgatgggtctgccccgcgtgatcgagctgttcgag
gcgcgcaagcccaagaaccaggcggtcgtggccgaccgtgacggcgtggtccgcatcgag
gaggaggaggagcgctacctcgtgcgcatcgaggccgaggacgaggccttcagctccaag
accgcgaccaagatcagcaagggcctgcgcctcgtcgtccgcgacggcgaccgggtggag
gcgggccagccgctgacgcgcggtgccgtaaacccgcacgaccttctgctctaccgcgac
accgacgccgcccagcgttacctcgtggaggaggtgcagcgcgtgtaccgctcgcagggc
gtgaaggtccacgacaagcacatcgaggtcatcgtgcggcagatgctgcgctacgtcgag
atcaccgacggcggcgacaccgacctgctggagggtcagacggtcgagcgctgggaggtt
gatggggcgaacgaggcgctggaggacggtaagacgccctcctcctggaagccggtgctg
ctcggcatcaccaagagcagcctgacgaccaagagctggctgtcggcggcgagcttccag
cacacgacgcacgtactcaccgaagcctccatgcgcggccaggtggacgatctgatcggc
ctgaaggagaacgtgatcctcggcaagctgatcccggcgggcacaggcctcaccaccgtc
cgcgagatgcaggtcgccgacgagcgcacgctggagaagtacggcgaggagagccgcagc
cccgactcggtgacggggacgcaacgctacgacgacacccgccccggcagcacgccgacc
gttcccggctacgccgactga
DBGET
integrated database retrieval system
