Deinococcus aetherius: DAETH_28190
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Entry
DAETH_28190 CDS
T08646
Name
(GenBank) hypothetical protein
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
dah
Deinococcus aetherius
Pathway
dah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DAETH_28190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dah03019
]
DAETH_28190
03016 Transfer RNA biogenesis [BR:
dah03016
]
DAETH_28190
Enzymes [BR:
dah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DAETH_28190
Messenger RNA biogenesis [BR:
dah03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DAETH_28190
Transfer RNA biogenesis [BR:
dah03016
]
Prokaryotic type
tRNA degradation factors
DAETH_28190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
BDP42850
UniProt:
A0ABM8AGD5
LinkDB
All DBs
Position
2773492..2777310
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AA seq
1272 aa
AA seq
DB search
MPDTQNVPADSEQQQSAASRAGRGRKKTAAQSAETPSPEQEAVTSAPKRGRGRKTPATNE
TPQAQTAAPKAQRGKRATQPAQPQPAPKPRRGRQPRAEAQPAQAAPAEAVTAEPTPVEAA
PVETAPVEITPTGGAAEVNTAEPVDAAGPSPAPQASNRRGRRAKAAATEPEAQPEAITSP
AEGPAETHRNRRGRKAKAQTVAEAEPAGNEGQAEPEQAQAAEPVLLEVPRTRRGRRPKVV
GPVAELPQETAPAEVPLTEVLGGVEPVAVEEEGAQAATTEDAPQMSLTVSTDAGQPLPVV
DNPAFEGEDDESSTPIASMEETTEAGEDDADADGRPDPARDLVIAQLRKVGRPIHVRDLE
RTFTRQMVSRLGDWRDLESLLEDLVRTGEVIRTRRRTYGLPEAMSLVRGRFQASAAGFGF
VVPDSGGEDFYVAPENTMEAWNGDIVLVRMEGRGDTGRGGTGPRRGQRGDGSPRASVVRI
VQRAYKQLVGSLEFSKGHPILKPDDARARHRILLLTEGIEGLPSGARVVTDLYWPEQTGE
DEVFGQVKRVLGEQDDPATETEAVIVKYGLRGDFPDDVLAQANAIPTEIPAEALMGRLDL
REFNIFTVDGRDAKDFDDAIHIQPTPQGTFVVGVHIADVSHYVREGTPLDKEAYARATSV
YLPGRVLPMLPEHLSNGVCSLVPYEDRLTMTALVELSAEGDILDVRLAPSVIQSKARLTY
DEVQAYSEATATLPDHARALEGDLHLLLKITSKLRQKRLREGSLDFKLREVKVDVGPDGR
MELIPIREETARGMIEDLMLLANKVVAHSLIEREIPALFRIHEEPTLQKFQDVTNALGRL
GISFPGGEPTPQAYQAVLKGVRGTPRESVVNTLLLRSMQQAKYAGENLGHFGLAFPEYLH
FTSPIRRYPDLLVHRVLKGVLAGDLTASSRGTHDLRGRLPGMGEHTSERERAAAEAERDL
TKYYQAKWAQEHLGETFPGNVSGVVASGLFVALDNGVEGKLHISNLDDDYYIYLEDAQIL
RGRSNGRTFRLGDALTVTISQVNPLARQIDFTQETAMDGDTPVRPRARRREDREAEKREK
LQAVSTAAPRKFTLDEPQPVTPAAPARADGGRGRGQGRDGRDGQGREPNGRDPGVRPPLR
PGGQGGGYKRRVITLERPRNEHLRPVNITVQRMYFGDWTVDNMPPEESHGGERGGRGFDR
GDRVGRGPGFSRGGQGGGALSNPNGRQGGGRPPRPQAQQAQAPSQGDGGQGGGDAEARRR
RRRRGRRGGNGG
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
gtgccggacactcaaaacgtccccgccgactccgaacaacagcaaagcgccgcaagccgg
gccgggcgaggccgcaagaagaccgccgctcagtccgccgaaaccccatccccggagcag
gaggccgtgacctccgccccgaagcgtggccgtggccgcaagacgcccgccacgaacgaa
accccgcaggcccagaccgccgcgcccaaagcccagcgaggcaagcgcgccacccagcct
gcccagccccagcccgcccccaagccccgccgtggccgtcagccgagggcggaggcccaa
cctgcccaggccgcccccgccgaagcggtcaccgccgagcccacgcccgtcgaggccgcg
cccgtggagacggctcccgtcgaaatcactcccaccggcggtgcggcggaggtcaacacg
gcggaacccgtcgatgccgccgggccctcccccgctccccaggcttccaaccgccggggc
cgcagggcaaaagccgccgccaccgagcccgaggctcagccggaggcgatcacctcccct
gccgagggacccgccgagacccacaggaaccggcgcggacgcaaggcgaaggcccagacc
gtcgccgaggctgagcccgccgggaacgagggtcaggccgagccggagcaggcccaggcg
gccgagcccgtgctcctcgaagtgccccgcacccgacggggccgcaggccgaaggtcgtc
ggccccgtcgccgaactgccccaggagaccgcccccgcagaggtgccgctgaccgaggtg
ctgggcggcgtggagcccgtggcggtcgaggaggaaggcgcccaggccgcgaccaccgag
gacgcgccgcagatgtcgctgacggtctcgacggacgccgggcagcccctgccggtcgtg
gacaacccggccttcgagggcgaggacgacgagtccagcacaccgattgccagcatggag
gagaccaccgaagcgggggaagacgacgccgacgccgacggacgacccgaccccgcccgt
gatctcgtgatcgcgcagcttcgcaaggtagggcgccccatccacgtccgcgacctggag
cgcaccttcacccggcagatggtcagccgcctgggcgactggcgtgacctcgaatcgctg
ctcgaagacctcgtgcggacgggagaagttatccgcacccggcggcgcacctacggtctg
cccgaggcgatgagcctcgtgcggggccgcttccaggcgtcggcggcgggcttcggcttc
gtggtgcccgactccggcggcgaggacttctacgtcgcccccgagaacacgatggaggcc
tggaacggcgacatcgtgctggtccgcatggagggccggggcgacaccgggcggggcggt
acgggaccccgccggggccagcgaggcgacggcagcccgcgcgcctcggtggtccgcatc
gtgcagcgggcgtacaagcagctcgtgggcagcctcgaattcagcaagggccaccccatc
ctcaagcccgacgacgcccgcgcccggcaccgcatcctgctgctgaccgaggggatcgag
ggcctgcccagcggggcccgcgtggtcaccgacctgtactggccggagcagacgggcgag
gacgaggtgttcgggcaggtcaagcgcgtcctcggcgagcaggacgaccccgcgaccgag
accgaggccgtgatcgtcaagtacgggctgcgcggcgacttcccggacgacgtgctggcc
caggcgaacgcgatcccgacggagattccggcggaggcgctgatgggccgcctcgacctg
cgcgagttcaacatcttcacggtggacgggcgcgacgcgaaggacttcgacgacgcgatc
cacatccaaccgacaccccagggcaccttcgtggtgggcgtccacattgctgacgtgagc
cactacgtgcgcgagggcaccccgctcgacaaggaggcttacgcccgcgccacgagcgtg
tatctgcccggccgggtcctgcccatgctccccgagcacctcagcaacggggtgtgcagc
ctcgtcccgtatgaggaccgcctgacgatgaccgcgctggtggaactctccgccgagggc
gacatcctcgacgtgcggctggcgcccagcgtgatccagagcaaggcgcggctcacctac
gacgaggtgcaggcgtactcggaggcgacggccacgctgcccgaccacgcccgcgcgctg
gagggagacctccacctcctgctcaagatcacgtccaagctgcgccagaagcggctgcgc
gaggggtccctcgacttcaagctgcgcgaggtcaaggtggacgtggggccggacgggcgg
atggaactgatccccatccgcgaggagacggcacgcgggatgatcgaggacctgatgctg
ctcgccaacaaggtggtcgcccactccctgatcgagcgcgagattccggccctctttcgc
atccacgaggaacccaccctccagaagttccaggacgtgacgaacgcgctgggtcgcctg
ggcatctccttcccgggcggtgagccgaccccgcaggcgtaccaggcggtcctcaagggc
gtgcggggcacgccgcgcgagagcgtggtgaataccctgctgctccgctcgatgcagcag
gcgaagtacgcgggcgagaacctggggcacttcgggctggccttcccggagtacctgcac
ttcacgtcgccgatccggcgttacccggacctgctggtccaccgggtcctcaagggcgtg
ctggcgggggacctgacggcctcctcacgggggacccacgacctgcggggcagactgccg
gggatgggggagcacacgtccgagcgcgagcgcgccgccgccgaggccgagcgcgacctc
acgaagtactaccaggcgaagtgggcgcaggagcacctgggcgagaccttccccggcaac
gtgtcgggggtggtggcgagcgggctgttcgtggcgctggacaacggcgtcgagggcaag
ctgcacatctccaacctcgacgacgactactacatctacctggaggacgcccagattctg
cggggacgctcgaacgggcgcaccttccgcctcggggacgccctcaccgtgaccatcagc
caggtgaaccccctggcccggcaaatcgatttcacccaggagaccgctatggacggcgac
accccagtccggccccgcgcgagacggcgcgaggaccgggaggcagagaaacgtgagaag
ttgcaggcggtgagcacggctgccccccgcaagttcaccctcgacgaaccccagcccgtc
accccggcggcccccgcccgcgccgacggcggacgcgggcgcggccagggacgcgacggg
cgtgacggacagggccgcgagccgaacgggcgtgaccccggcgtccgtccccccctgcgc
ccgggcgggcagggcggcggctacaagcggcgcgtgatcacgctggagcgcccccgcaac
gagcacctgcggcccgtgaacatcaccgtgcagcgcatgtacttcggcgactggacggtg
gacaacatgccccccgaggaaagccacggcggcgagcgcggcggacgcggcttcgaccgg
ggtgaccgtgtcgggcgcggcccgggcttctcgcgcggcgggcagggcggtggcgcgctg
tccaaccccaatgggcgccagggcggaggacgcccaccccgtccccaggcgcagcaggcc
caggctccctcgcagggggacggcgggcagggcggtggtgacgccgaggcccgtcgccga
cgccgtcgccggggacgccggggtggaaacggcgggtag
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