Desulfosporosinus acidiphilus: Desaci_3213
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Entry
Desaci_3213 CDS
T02148
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
dai
Desulfosporosinus acidiphilus
Pathway
dai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desaci_3213
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dai03019
]
Desaci_3213
03009 Ribosome biogenesis [BR:
dai03009
]
Desaci_3213
Enzymes [BR:
dai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Desaci_3213
Messenger RNA biogenesis [BR:
dai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desaci_3213
Ribosome biogenesis [BR:
dai03009
]
Prokaryotic type
rRNA helicases
Desaci_3213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
AAA_30
CMS1
UvrD-helicase
Helicase_RecD
AAA_22
Orthopox_F6
Motif
Other DBs
NCBI-ProteinID:
AFM42114
UniProt:
I4D8J0
LinkDB
All DBs
Position
complement(3352397..3354010)
Genome browser
AA seq
537 aa
AA seq
DB search
MMVERLQSFGDIQLSKQIVQGLSEMGFEEPSPIQQQAIPVALEDTDIIGQAQTGTGKTAA
FGIPIAEKVNAKFQAVQALIVTPTRELAIQVAQEISKIGKYKHVKPLPIYGGQPIDRQIR
ALRMGYQVVVGTPGRLLDHLNRGTLRLQHVKMMVLDEADEMLDMGFVDDIESLLKAVPEE
GRQVMLFSATMPQAIRKLAQTYMKNPQSVTVSRDELTVPLIEQVFYETRESKKVDALCRI
IDMEDIGQGITFCRTKRGVDELVVALEARGYFADALHGDLSQQQRDRVMKRFRDGKTEML
VATDVAARGIDISNLTHVINFDIPQDPVSYVHRIGRTGRIGRRGLAITLISPKEYRQLRL
IENLIKTRIRRRELPSLADISERQAENLKNQLIKLIQNDRLGNYRAIVGDLLEEYDSTDV
AAAALKFAVEGADSEERIDDNDPDVNHFGNTGAAPGMVRFFMNIGRVQQIRPQDIIRWIA
EESGIPGNIIGMINIYDKFTFVEVPEEYASRVLSCMHQAMIKGRRVSVEPAKARENS
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
gtgatggttgaacgtttacaatctttcggggatattcagttaagcaagcaaatagtccaa
ggtttgtctgaaatgggatttgaggaaccttctccaattcagcaacaggcaattccggta
gctcttgaagatacggatattattgggcaggcacagacaggaacggggaagacggcggct
tttgggattcccatcgctgaaaaggtcaatgcgaaattccaagccgtccaagcactcatt
gtaactccaacgcgcgaattggctattcaggttgcgcaggaaatatctaaaatcggtaaa
tataaacacgtaaaaccgttgcctatctatggcggccagccgatagaccgtcaaattcgt
gccttgcgtatgggctaccaagttgttgtcggaacccccggaaggttgttagatcactta
aataggggcacactgcgcttgcagcatgtcaagatgatggttttggatgaagcggatgaa
atgctggatatgggatttgtcgatgatattgagagccttctcaaagctgttcccgaggaa
ggccgtcaggttatgcttttttcagcgacaatgccgcaggcgattcgcaagttagcacag
acctatatgaaaaatcctcaatctgtgacagttagcagggatgaattaacagttcctctc
attgaacaggttttttatgagacgagggaaagcaaaaaagtggatgctttatgtcgtatc
atcgatatggaggatatcggtcaagggattactttttgccgcacaaaacgaggagtcgat
gaacttgtcgtcgccttggaagcgcgggggtattttgcggatgccctgcacggggatttg
agccagcagcagagagacagggttatgaagcgcttccgtgatggaaaaacagaaatgtta
gttgctactgatgtagcagccagaggaatcgacatcagtaatttgacccatgtcattaac
tttgacattccccaagatcccgtatcctatgtacacagaataggaagaacagggcgtatt
ggccgacgaggactggcaataaccttgatttctcctaaagaatatcgtcaacttcgtttg
attgaaaatttaattaagactaggatacgacgccgagaacttccttccttagcagatatt
agcgaacgtcaagcggaaaatctaaaaaatcaactgattaaattaattcagaacgatcgc
ttaggaaattatcgggctatcgtcggagatttgctggaagaatacgattcaacggatgtt
gcggcggctgctctaaagtttgcagttgagggagctgattcagaagagcgaattgacgat
aacgacccggatgttaatcactttggcaacaccggagcagcgccggggatggttcgtttc
tttatgaatataggaagagttcagcaaattcgccctcaggacatcatacgctggattgca
gaagaaagcggaattcccggaaatatcattgggatgataaatatctatgataaatttacg
tttgttgaggttcctgaagaatacgcttcgagggtcttaagctgtatgcatcaagcaatg
attaagggccgaagagtcagtgtcgaaccggcgaaagcccgcgaaaactcctga
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