Desulfosporosinus acidiphilus: Desaci_3287
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Entry
Desaci_3287 CDS
T02148
Name
(GenBank) 2''-5'' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dai
Desulfosporosinus acidiphilus
Brite
KEGG Orthology (KO) [BR:
dai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dai03016
]
Desaci_3287
Enzymes [BR:
dai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Desaci_3287
Transfer RNA biogenesis [BR:
dai03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Desaci_3287
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
HVSL
2H-SAK
Motif
Other DBs
NCBI-ProteinID:
AFM42183
UniProt:
I4D8Q9
LinkDB
All DBs
Position
complement(3427327..3427872)
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AA seq
181 aa
AA seq
DB search
MRLFIGIDIPDILKHSLLTFQSELKRLGINGSWKSKDNFHITLEFLGELDAIVIPDITDR
MSIAAQHSQAFRLEIGGLGVFPSYKRPHTFWTAVGGNLPELFRLRDELHALLAQKGLRLE
DRKFKPHITIASRPNFNDIDLSSLKTKNLGEFTVNEVTLFESVVLQGKRIYQPLNQLRLQ
G
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgagattatttattggtatcgatataccggatattcttaaacattccctccttaccttt
caatcagaacttaaaaggctgggaatcaacggctcttggaaatccaaggataacttccat
ataacgctggaattcttaggggaacttgacgccattgtaataccggacattaccgatagg
atgtctatagctgctcagcatagtcaggcttttagattagagattggcggactgggagtt
ttcccttcatataagcggccgcacactttctggaccgcagtgggcggaaacctgccggaa
ctcttccggctaagggatgagctgcatgctctgctcgcccaaaaaggtttgcgtttggaa
gatagaaaatttaagccgcatattaccatagcttctcggccaaattttaatgacatcgac
ttatcaagcctaaagaccaagaatttaggtgaatttacggttaatgaggtaactcttttt
gaaagcgtagtccttcaaggaaagagaatttaccaacctttgaatcaattaaggctacag
ggataa
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