Desulfosporosinus acidiphilus: Desaci_3523
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Entry
Desaci_3523 CDS
T02148
Name
(GenBank) hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dai
Desulfosporosinus acidiphilus
Pathway
dai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desaci_3523
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dai03019
]
Desaci_3523
Messenger RNA biogenesis [BR:
dai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Desaci_3523
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AFM42404
UniProt:
I4D9D0
LinkDB
All DBs
Position
complement(3675355..3677019)
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AA seq
554 aa
AA seq
DB search
MPKEHKLQIIPLGGLGEIGKNMTVIRYDNQMVLIDAGLAFPEDEMLGIDIVIPDYSYLIE
NKDLLLGILITHGHEDHIGALPYLLRDIDVPIFGTRLTLGIIQSKMKESNLNSIKATVVQ
PRDTIKLGVFRIEFIRVNHSIPDSVGIAIHTPLGTIVHTGDFKLDHTPVSGEILDIHKFS
ELGDKGVLCLLSDSTNVERAGFTPSERNVGEMIDEAFRNAKERVILASFASNVYRLQQAI
TSAVKTNRKVAVVGRSMLNIVGISAELGYLDIPEGTLVDIDEIIGLPGNQACILTTGSQG
EPMSALTRMANHDHRHVAIQPGDTVIISASPIPGNEKSVARTVDQLFKLGANVIYESAEG
MHVSGHASQEEQKLMLNMVRPKYFMPVHGEYRMLIKHAQLAEQLGIPREDIFVSENGGIV
EFTRHGAAIGGKVTAGKILIDGLGIGDVGNIVLRDRKQLSQDGILIVVMTISRSTGAIVA
GPDVVTRGFVYVRESESMLDEAKLKVRQTMARCRENNITEWAVLKSQIRDALSKQFYEKT
RRRPMILPIIQEVE
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgcccaaagaacacaaactgcaaattatccccttgggagggcttggggaaataggaaaa
aacatgaccgtgatacgttatgataatcaaatggtgcttattgatgccggtctggcattt
cctgaggacgaaatgctcggtatcgatattgttatccctgattattcatatttaattgaa
aacaaggatttgcttctcggcatattaataacccacggacatgaagatcacataggtgct
ttgccttatcttttgagagatatcgacgtacctatttttggaacgcgtttgaccctcggg
atcattcaatccaagatgaaagaaagtaatttaaatagtattaaggctactgtggttcag
ccgcgtgatactattaagctcggagttttcagaatagaatttattcgagttaatcacagc
attcccgattctgtcggaatagcaattcatactcccttggggactattgttcacaccggt
gattttaaactggatcacacaccagtatcgggagaaattctggacatccataaattctct
gaattaggggataaaggggttttatgtctcctctctgatagcaccaatgtagaaagagcc
ggctttacaccctcagaaagaaatgtcggcgagatgattgacgaggcgttccgcaatgcc
aaagagcgggttatcctggcaagctttgcctcaaatgtctaccgtttgcagcaggctatt
acttctgcggtcaaaaccaatcggaaggttgccgttgtagggcgaagtatgcttaatatt
gtgggaatttcagccgaattaggatatttggatataccggaaggtactttggttgatatt
gatgaaatcatcggtctgccgggtaatcaggcttgtatcctgacaacaggaagtcaggga
gaacctatgtctgctcttaccagaatggctaatcacgaccatcgtcatgtggccattcag
ccaggtgacacagtcattatttcagcaagtcccattccgggcaatgaaaagtctgtcgcc
agaactgtagaccagttgtttaaactcggtgccaacgttatctatgaatcggcagaggga
atgcatgtttccggtcatgcaagtcaagaagagcaaaagttaatgttaaatatggtacgt
cctaagtatttcatgccggttcacggcgaatatcgcatgctgattaagcatgctcaatta
gcggagcagttgggaattccgcgtgaagatatttttgtctctgaaaacggcggaatcgtc
gagtttactcgccatggggcagctatcggcggcaaggtaacggcgggaaaaatattgata
gatggcttaggtattggcgatgtgggaaacattgtcctgagagaccgtaaacaactctct
caagacggcattttaatcgtcgtgatgacgattagtcgttcaacaggggcaattgtggcc
ggacccgatgtggtcactcgcggttttgtctacgttcgagagtcagagtctatgttggat
gaagcgaaattaaaggttagacagactatggcccgctgccgtgagaataatataacagaa
tgggcggtactgaagagccaaatcagagatgctttaagcaagcaattttatgagaaaacc
agacgcagacctatgattttgccgattattcaggaagttgaataa
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