KEGG   Desulfosporosinus acidiphilus: Desaci_4116
Entry
Desaci_4116       CDS       T02148                                 
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
dai  Desulfosporosinus acidiphilus
Pathway
dai02024  Quorum sensing
dai03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dai00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Desaci_4116
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    Desaci_4116
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dai03019]
    Desaci_4116
   03036 Chromosome and associated proteins [BR:dai03036]
    Desaci_4116
Messenger RNA biogenesis [BR:dai03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     Desaci_4116
Chromosome and associated proteins [BR:dai03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    Desaci_4116
SSDB
Motif
Pfam: Hfq Hfq_1
Other DBs
NCBI-ProteinID: AFM42978
UniProt: I4DB04
LinkDB
Position
complement(4271362..4271610)
AA seq 82 aa
MIIKSKLQDAYLDQLQTTKTPVIVHLLSGVQIKGKIIGNDIFTIVLEFEGKQQMLFKQMI
STISPLRPVNLMEIQSSQKQGK
NT seq 249 nt   +upstreamnt  +downstreamnt
atgataattaaaagtaaactgcaagacgcgtacctagatcaactacaaaccacaaaaaca
ccagtcattgttcatttactaagtggcgtccaaatcaagggtaaaattattgggaatgac
atatttaccatagtgttagaatttgaaggaaagcaacaaatgcttttcaagcaaatgatt
tcgactatatcaccacttcgccccgtcaacctaatggaaatacaatctagtcaaaaacaa
ggaaaatag

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