Desulfosporosinus acidiphilus: Desaci_4401
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Entry
Desaci_4401 CDS
T02148
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
3.6.4.13
]
Organism
dai
Desulfosporosinus acidiphilus
Pathway
dai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Desaci_4401
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dai03019
]
Desaci_4401
03009 Ribosome biogenesis [BR:
dai03009
]
Desaci_4401
Messenger RNA biogenesis [BR:
dai03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Desaci_4401
Ribosome biogenesis [BR:
dai03009
]
Prokaryotic type
rRNA helicases
Desaci_4401
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Helicase_RecD
AAA_30
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AFM43245
UniProt:
I4DBS1
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All DBs
Position
complement(4555883..4557349)
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AA seq
488 aa
AA seq
DB search
MASFTDLGLSETIIRSIVNMGFEETTPIQEMTIPIALQGRDLIGQAQTGTGKTAAYGIPL
IERFAEQSEQIQGIVLAPTRELAVQVAEELNKIGQFKGIHSLPIYGGQNIDWQIRALRKR
PHIIVATPGRLMDHMRRRTIRLNEIKIVVLDEADEMLNMGFLEDIETILKEIPEIRQTLL
FSATMPKQIQNIAQRFMKEPEFIQIKATGVTVSDIEQHYIEVPEKLKFDVLTRLLDIQSP
ELSIVFARTKRRVDELSEGLNKRGYSAEGIHGDLTQSKRDSVLRQFKDGTIDVLVATDVA
ARGLDISGVTHVFNFDIPQDTESYVHRVGRTGRAGKTGLAITFVTPREMGMLRLIESVIK
RRVLRKPIPTIVEAVQGQQRLTMNEILRVIAEEDIEKYKGLAEELLAENDSVTLLSAALK
VITKEPENVEVRLTETAPIRVKGMGNPRGRQGGVPKKNYNQRTDTWSRRRSHDGRIGTAG
ASRGKGLV
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
ttggcatcttttacagatttaggactaagtgaaacgattatccgctctattgtcaatatg
gggtttgaagaaactacacccattcaagaaatgactatacccatagctttgcagggtcgg
gatttgatcggacaggctcagacagggacaggtaagacagcggcttatggaataccactc
atagaaagatttgctgagcaatcagaacaaattcaggggatagtattggctcctaccagg
gaattagcggttcaagtcgcagaggagttaaacaaaattggccagtttaaagggattcat
tccttgccaatttatggggggcaaaatattgactggcagattcgcgccctgagaaagagg
cctcatattattgtggcaactccgggacgattaatggatcacatgcggagaagaacaatt
cgtctgaacgaaataaagattgttgttttagatgaagccgatgagatgttaaatatgggc
tttttggaggatatagagacgatactaaaggaaattccggagattcgtcaaactctcctc
ttctcagcgaccatgcccaagcagattcagaatattgcccaacggttcatgaaagagcct
gaattcattcaaattaaagcaacaggtgtaacggtttctgatatcgaacagcattatatt
gaagttccggaaaagttaaaatttgatgtcttaacaagacttttggatattcaatcaccg
gagttgtccatagtttttgctcgcacgaagcgaagggtggacgaactttcagaggggtta
aataaacgtggctattctgctgaaggtattcacggtgatcttacccaaagtaagagggat
agtgttttaagacaatttaaagatggaacgatcgacgtcttggtagctaccgatgttgcg
gcgagaggacttgatatcagcggagtgactcatgtttttaactttgacattccccaggat
acagaaagctatgtccatcgggttggcagaacaggtcgtgccggaaagacgggtcttgct
attacctttgtaacaccacgcgagatgggaatgttaagacttattgagtctgtcattaag
cgtagagtcttgagaaagccgattccaacgatcgttgaagcggttcagggtcagcaacgg
ttaacaatgaatgaaatattaagagtcattgctgaggaggacattgagaaatataaggga
ctagcagaagagctgctcgccgaaaatgattctgtaacgctgctgtcggcagccttgaaa
gttattactaaagaaccggaaaacgtcgaggtgcgtttaacagagactgcgccgattcgc
gtgaagggtatgggtaatccgagaggtcgtcaaggtggggtccccaagaaaaactataat
cagagaacggatacttggtcaagaagaagaagccatgatggacgaattggaacagcgggt
gcttcaagaggaaaaggcttagtctaa
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