Dechloromonas aquae: VX159_00100
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Entry
VX159_00100 CDS
T10882
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
daj Dechloromonas aquae
Pathway
daj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VX159_00100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daj03019
]
VX159_00100
Enzymes [BR:
daj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VX159_00100
Messenger RNA biogenesis [BR:
daj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VX159_00100
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_25
AAA_22
HTH_15
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WVT84251
LinkDB
All DBs
Position
22146..23456
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AA seq
436 aa
AA seq
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MTFAELGLTAPLLQTLAERGYDTPTPIQEKAIPVILAGRDLIAAAETGTGKTAAFALPLL
QILAQGEPAPVAATQVRAVVLVPTRELAEQVLASLQAYSAGLGLSSYAAYGGVSLNPQQS
RLAQGVDVLVATPGRLVDLFTKGAVRFRELRLLVLDEADRMLDLGFAEELSILFSAFPRQ
RQTLLFSATFPDAVRGLTRSRLRDPRSVEAGPRNAAARTVEQALIPVDRARKRELLLALY
QRRGWQQLLVFAKTKKGCDELAAALAAAGIAADCIHADRPQAARSKALAGFKAGSVKVLV
ATDIAARGLDIGGLPQVLNFDLPLQAEDYIHRIGRTGRAGQPGTAISLVAADEMPQLCAI
EALLKAPLPRIDEPDFAPQSALPGAAASAPAPAAAPTKSSSGGRNKAPSHWEGLDDFPDD
SSAKTSRRRGGRRGRG
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacttttgccgaactcggcctcaccgcgccgctgctgcagactctggccgaacgcggc
tacgacaccccgacgccgatccaggaaaaggcgatcccggtcattctcgccggccgcgac
ctgatcgccgccgccgaaaccggcaccggcaagaccgccgccttcgccctgcccttgctg
caaatccttgcccagggcgagccggcgccggtcgccgcaacccaggtgcgggcggtggtt
ctggtgccgacccgcgaactcgccgaacaggtgctggccagcctgcaggcttacagcgcc
ggcctcggtctgagcagctacgcggcttacggcggggtcagcctcaatccgcagcaaagc
cggctggcgcagggcgtcgatgtgctggtggcgacgccggggcggctggtcgacctgttc
accaagggggcggtgcgctttcgcgaattgcgcctgctggtcctcgacgaagccgaccgc
atgctcgatctcggctttgccgaagaattgtcgatcctgttctcggcctttccgcgccag
cgccagactctgctcttttcggcaaccttccccgacgcggtgcgcggcctcacccgcagt
cgcctgcgcgacccgcgcagcgtcgaagccggcccgcgcaacgccgccgcccgcaccgtc
gaacaggcgctgatcccggtcgaccgggcgcgcaagcgcgaattgctgctggcgctttac
cagcggcgcggctggcagcagttgctggtcttcgccaagaccaagaaaggctgcgacgaa
ctcgccgccgcgctggccgccgctggcatcgccgccgactgcatccatgccgaccggccg
caggccgcgcgcagcaaggcgctggccgggttcaaggcaggttcggtcaaggtgctggtg
gcgaccgacatcgccgcgcgtggccttgatatcggcggtctgccgcaagtgctcaatttc
gacctgcccttgcaggccgaggattacatccaccggattggccgcactggccgcgccggc
cagccgggcaccgcgatttcgctggtcgccgccgatgaaatgccgcaactgtgcgccatc
gaagccctgctcaaggcgccgctgccgcgtatcgacgagccggatttcgcaccgcaaagc
gccctgcccggcgccgctgcgagtgctccggcgcccgccgcagcgcccaccaaaagcagt
agcggcgggcgcaacaaagcacccagccactgggaaggcctcgacgattttcccgatgat
tcctctgccaaaacgtcgcgccgccggggcggccggcgcgggcggggctaa
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