Dechloromonas aquae: VX159_03575
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Entry
VX159_03575 CDS
T10882
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
daj Dechloromonas aquae
Pathway
daj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VX159_03575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daj03019
]
VX159_03575
Enzymes [BR:
daj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VX159_03575
Messenger RNA biogenesis [BR:
daj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VX159_03575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
WVT85783
LinkDB
All DBs
Position
complement(778381..779742)
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AA seq
453 aa
AA seq
DB search
MGYSKPTPIQAQAIPLVISGKDIMGGAQTGTGKTAAFTLPILQRILPFASSSPSPAKHPV
RALILAPTRELALQVFESVKAYSKHTPLRALCAFGGVDIKPQIAELKKGVEILVATPGRL
LDHVENKSVSFNSVQALVLDEADRMLDMGFIPDVTRILKMLPAQRQSLLFSATFSDEIKK
LADTMLQSPVLVEVARRNQVSETISHRVHPVSDWGKRGLLIKLLKSGDIRQCIVFMRTKQ
GCSRLSRELQRAGIHADAIHGDKSQLDRIKALDAFKAGQTQALVATDVAARGLDIDELPY
VINYELPHVPEDYVHRIGRTGRAGRQGNAISLVSAHEVGYLVEIEKLIKRPIEQIEVAGF
EPEAEYEYPPGNKKKRPAPAPSKAPLTQPAARPATSGRRRNPMIAADGFDFSRPYEEKPQ
GEIPDSPQAPAKIDPHKPRRVVAALLGGLGRKD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgggctacagcaagcccacgccgatccaggcccaggccatcccgctggtgatctccggc
aaggacatcatgggcggcgcccagaccggcaccggcaaaacagcagcgtttacgctgccg
atcctgcaacgcatcctgccttttgccagttccagcccctcgccggccaaacacccggtc
cgcgcattgatcctggctccgacccgcgaactggcgctgcaggtattcgaatcggtcaag
gcctacagcaagcatacgccgctgcgggcactatgcgcctttggtggcgtcgatatcaag
ccgcagatcgcagaactgaaaaaaggcgtcgaaatcctggtcgccacgccgggccgtctg
cttgaccacgtcgagaacaagagcgtcagcttcaactcggtgcaagcgctggtcctcgac
gaagccgaccgcatgctcgacatgggcttcatccccgacgtcacccgcatcctcaaaatg
ctgccggcgcagcggcagagcctgctgttttccgccactttctcggacgagatcaagaag
ctggccgataccatgctgcaatcaccggtgctggtcgaagtcgcccgccgcaaccaggta
tcggaaaccatcagccatcgcgtgcatccggtttccgactggggcaagcgcggactgttg
atcaaactgctgaaatccggcgatatccgccagtgcatcgtcttcatgcgcaccaagcaa
ggctgctcgcgcctctcacgcgaactgcagcgggccggcatccacgccgacgcgattcac
ggtgacaagagccagctcgaccggatcaaggccctcgatgccttcaaggccggccagacc
caggcgctggtggcaaccgacgtggcggctcgcggtctcgacatcgacgaactgccgtat
gtaatcaactacgagttgccgcacgtgccggaagattacgttcaccggatcgggcgtacc
ggccgcgccgggcgccaggggaacgcaatctctctggtcagcgcgcacgaagtcggctat
ctggtcgagatcgaaaaattgatcaagcggccgattgaacaaatcgaggtcgcaggtttc
gagcccgaagcggaatatgaatacccgccggggaacaagaagaaacgccccgcgcctgcg
cccagcaaggcaccgctgacccagccggcggcgcgcccggcaacttcgggacggcgacgc
aatccgatgattgccgccgacgggttcgacttcagccggccttatgaagaaaagccgcag
ggagaaatccccgattccccgcaggcaccggccaagatcgacccgcacaagccgcgccgg
gtcgttgccgcactgctcggcggtctgggccgcaaggactga
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