Dechloromonas aquae: VX159_04760
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Entry
VX159_04760 CDS
T10882
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
daj Dechloromonas aquae
Pathway
daj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VX159_04760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daj03019
]
VX159_04760
Enzymes [BR:
daj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
VX159_04760
Messenger RNA biogenesis [BR:
daj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
VX159_04760
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WVT85130
LinkDB
All DBs
Position
1051645..1052943
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AA seq
432 aa
AA seq
DB search
MKFTDLGLNAEIQRAVAEQGYDTPTPIQQQAIPAVLAGHDLMATAQTGTGKTAGFTLPIL
QRLTAGANDRLSRVARTPRVLVLTPTRELAIQVEESVRTYGKHLPINSLAVFGGVGINPQ
IGHLRRGVDILVATPGRLLDHVQQSTVNLSAIEIFVLDEADRMLDMGFIRDIRKIIALLP
KERQNLLFSATFSPEIRELATGLLHQPVSVDVAPRNTAAETVKQTVIETNREQKKDLLEH
LFNERSLHQVLVFARTKHGADALARKLDKAGIKAGAIHGDKSQGARTRVLGEFKEGKLAA
LVATDIAARGIDIDGLPYVINYELPNVPEDYVHRIGRTGRAGMEGEAISLVCHDERPQLK
DIEKLIRRSLDRVVVPGFEAAAQAAPRPPQPTPAKRSGQPARKGGGERSGGGGQKAGNPR
NGQPHRSGSRHR
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaccgacctcggccttaatgccgaaatccagcgtgccgttgccgaacaaggc
tatgacacgccgacgccgatccagcagcaggcgattcccgccgtgctcgccggccacgac
ctgatggcgacggcgcagaccggcaccggcaagaccgccgggtttacgctgcccatcctg
cagcgacttaccgccggcgccaacgaccgcctgagccgggtcgcgcggacgccgcgcgtg
ctggtgctgacgccgacccgcgaactggcgatccaggtcgaggagagcgtgcgcacctat
ggcaagcacttgccgatcaattcgctggcggtctttggcggcgttggcatcaatccgcag
atcggccatttgcgccggggcgtcgatatcctggtggcgacgccggggcgcctgctcgac
cacgtgcagcaatccacggtcaacctgtcggcgatcgagattttcgtcctcgacgaggcc
gaccgcatgctcgacatgggcttcatccgcgatatccgcaagatcatcgcgctgctgccc
aaggaacggcagaacctgctcttctcggcgaccttctcgccggaaatccgcgaactggcg
accggcctgctgcaccagccggtcagcgtcgatgtcgcgccgcgcaatacggcggccgaa
accgtcaagcagacggtgatcgagaccaatcgcgagcagaagaaggatttgctcgagcat
ttgtttaacgagcgcagcctgcaccaggtgctggtctttgcccgcaccaagcacggtgcc
gacgcactggcgcgcaagctggacaaggccgggatcaaggccggcgcaatccacggcgac
aagtcgcagggggcgcgcacccgcgtgctcggcgaattcaaggaaggcaagctggcggcg
ctggtggcgactgacatcgccgcccgtggcatcgacatcgacggcttgccctatgtgatc
aactacgaactgcccaatgttcccgaggactacgtgcaccggatcggccggaccggccgt
gccgggatggaaggcgaggcgatttcgctggtctgccacgacgagcggccgcaactcaag
gacatcgagaagctgatacggcgttcgctcgaccgcgtcgtggtccccggtttcgaggcg
gccgcccaggccgcaccgcgtccgccgcaaccgacgccggccaagcgcagcggtcagccg
gcccgcaaaggcggtggcgaacgcagtgggggcggtggccagaaggccggcaacccgcgt
aacggccagccgcaccgcagcggcagccggcatcgctga
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