Dechloromonas aquae: VX159_06010
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Entry
VX159_06010 CDS
T10882
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
daj Dechloromonas aquae
Brite
KEGG Orthology (KO) [BR:
daj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
daj03016
]
VX159_06010
Enzymes [BR:
daj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
VX159_06010
Transfer RNA biogenesis [BR:
daj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
VX159_06010
Prokaryotic type
tRNA splicing ligases
VX159_06010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WVT85360
LinkDB
All DBs
Position
1326429..1327625
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AA seq
398 aa
AA seq
DB search
MPIQQTLNTAGVPVKIWTDDVDEASRQQLRNIAALPFIHRHVAAMPDVHLGIGATIGSVI
ATQDAIVPAAVGVDIGCGMVAARLSLAAGDLDEKRLRKVFDQISRDVPVGKAQHEDSRAL
VAAARPFDARLKALTDKHPQLLKSLGKFSKWVNQLGSLGGGNHFIEVCLDEAGQVWVMLH
SGSRGIGNALATYFIELARRDIERQQIHLPDRDLAYFREGSEHFADYVAAVHWAQEYAYA
NRECMLDLVLAGLRRHLPEFVVTGEVVNCHHNYVAREAHYGADVWVTRKGAIRAGRGELG
IIPGSMGARSYIVRGLGNPESFCSSAHGAGRRMSRNAAARAFSEADLRRQTEGVVCRKDK
GVIDEIPAAYKDIDAVMAQQQDLTEIVHTLKQVLCVKG
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgcccatccagcaaaccctgaacacggccggcgtcccggtcaagatctggaccgacgac
gttgacgaggcctcgcgccagcaactgcgcaacatcgccgccttgcctttcattcatcgc
cacgtcgcggcaatgcccgacgtgcacctcgggatcggcgccaccatcggctcggtgatt
gcgacgcaggacgccatcgtgccggcggcggtcggcgtcgatattggctgcggcatggtg
gccgcccgcttgtcgctggccgccggcgacctcgacgaaaagcgcctgcgcaaggtcttc
gaccagatcagccgcgacgtgccggtgggcaaggcgcagcatgaggacagccgggcgctg
gttgcggcggcgcggcccttcgacgcccggctcaaggcactgaccgacaagcatccgcaa
ctgctcaagtccttgggcaagttctcgaaatgggtcaatcagctggggtcgctgggcggc
ggcaaccacttcattgaggtttgtctcgacgaagccggacaggtctgggtgatgctgcat
tccggcagtcggggcattggcaatgcgctggcgacttatttcatcgaactggcccggcgc
gacatcgagcgccagcagattcacttgcccgaccgcgacctggcttattttcgcgagggc
agcgaacactttgccgactatgttgccgccgtgcattgggcgcaggaatacgcctacgcc
aaccgcgagtgcatgctcgatctggttctcgccgggctcaggcgacacttgccggaattt
gtcgtgaccggcgaggtggtcaattgccaccacaactacgtcgcccgcgaggcgcattac
ggcgccgacgtgtgggtgacgcgcaagggcgcgatccgcgccgggcgcggcgaactcggc
atcatccccggcagcatgggcgcccgcagctacatcgtgcgcggcctgggcaatccggaa
agcttctgctccagcgcccatggcgccggtcgccggatgagccgcaacgccgccgcccgc
gccttctccgaagccgacctgcggcgccagaccgaaggcgtcgtctgccgcaaggacaaa
ggcgtgatcgacgaaatccccgccgcctacaaggacatcgacgcggtgatggcccagcag
caggacctgaccgagatcgtgcataccttgaagcaggtgttgtgcgtcaagggataa
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