Dechloromonas aquae: VX159_06705
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Entry
VX159_06705 CDS
T10882
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
daj Dechloromonas aquae
Pathway
daj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
daj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
VX159_06705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
daj03019
]
VX159_06705
03009 Ribosome biogenesis [BR:
daj03009
]
VX159_06705
Enzymes [BR:
daj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
VX159_06705
Messenger RNA biogenesis [BR:
daj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
VX159_06705
Ribosome biogenesis [BR:
daj03009
]
Prokaryotic type
rRNA processing factors
VX159_06705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WVT85493
LinkDB
All DBs
Position
complement(1476237..1479047)
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AA seq
936 aa
AA seq
DB search
MKRMLFNATQAEELRVAIVDGQKLIDLDIESAAKEQRKSNIYKGVITRIEPSLEACFVDY
GADRHGFLPFKEVSRAFFQSGVEPGKAKINEALKEGQELIVQVEKDERGNKGAALTTYVS
LAGRYLVLMPNNPRGGGVSRRVDGDERAELRETMDQLQVPQGMSLIARTAAIGRQAEELQ
WDLNYLLQLWSAIEGAAQQQSGPFLIYLEGSLVIRAIRDYFQPDIGEILIDTDEIYEQAK
AFMGTVMPGNVSRVKRYRDDVPLFSRFQIEHQIETAFARQVNLPSGGAIVIDHTEALVAV
DVNSGRATKGADIEETALRTNLEAADELARQLRLRDLGGLIVIDFIDMESAKNQREVENR
LRDALRFDRARVQMGKISRFGLMELSRQRLRPALAETSYIPCPRCTGTGHIRSTESAALH
ILRILEEEAMKENTGAVHVQVPVDVATFLLNEKRPDIQAIELRHKVTILLIPNVHLETPA
HTIARLRHDDLNHDDAREPSYKMVDMPVEEAVARNAQNETAKPRQEAVVKGISPEQPAPV
VAEKPVAPPAAEVKPSAGLIARIMSWFGSTKEEAAPATPTQTEAPKKSREGRRERNEGRD
NRRNNRNNRRDEERGERPERSERAEKPARDESTVNSAERQERRQRNNEQRREKRERQQAQ
EVAASTESTVASNAVPNAVPALEQSAANGEESGNRRRGRRGGRNRGERRQESEQGENLNL
QAVASDTAAHPELNQEPVVVVIPAAIEPATSAAPVAPEAVAATPAPDAAPAAPEATTEAP
AIAPASAPLPHAEPQAPAAEAAATEAPPAAPVILGEAPQTQPETAPAGTPEIPTAPVPAA
AAPQAPEPAEASAPAPAEASAPAPAEASSPAELPAAAPLTANVEQALAESGLVMVQTTSS
AAPVTSEVPVKLGRPRKARSVNVESEPLVMVETGNK
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctcttcaatgcgacacaggcggaagaactccgtgtcgccattgtcgac
ggtcagaaactgattgacctcgacattgaatccgccgcgaaggaacaacggaaaagcaac
atctacaaaggggtcatcacccgtatcgagccttcgctcgaagcctgctttgtcgattac
ggtgctgaccgccacggctttctgccgttcaaggaagtttcccgtgcctttttccagtct
ggtgtcgaaccaggcaaggccaagatcaacgaggccctgaaggaaggccaggagttgatc
gtgcaggtcgaaaaggacgagcgcggcaacaagggcgccgccctgaccacctacgtctcg
ctggccggccgctatctggtgctgatgccgaacaatccgcgcggcggcggcgtctcgcgc
cgcgttgacggcgacgaacgcgctgaactgcgcgaaactatggatcagctgcaagtgccg
caaggcatgagcctgatcgcccgcactgccgccatcggccgccaggccgaggaactgcag
tgggacttgaactacttgttgcagctgtggagtgccatcgaaggcgccgcccagcagcag
tccggccccttcctgatctacctcgaaggctcgctggtcatccgcgccatccgcgattat
ttccagccggatatcggcgaaatcctgatcgataccgacgagatctacgagcaagccaag
gccttcatgggcacggtgatgccgggtaacgtcagccgcgtcaagcgctaccgcgacgac
gtgccgctgttctcgcgcttccagatcgaacaccagatcgaaaccgccttcgcccgccag
gtgaacctgccctccggcggcgccatcgtgatcgaccacaccgaagccctggtcgctgtc
gacgtgaactctggtcgtgccaccaagggcgctgacatcgaggaaaccgcgctgcgcacc
aacctcgaagctgccgacgaactcgcccgccagctgcgcctgcgcgacctgggcggcctg
atcgtgatcgacttcatcgacatggaaagcgccaagaaccagcgcgaagttgaaaaccgc
ctgcgcgacgcgctgcgcttcgaccgcgcccgcgtccagatgggcaagatcagccgcttc
ggcctgatggaactgtcgcgccagcgcctgcgtccggcgcttgccgaaaccagctacatc
ccttgcccgcgctgcaccggcaccggccacatccgctcgaccgaatcagctgcgctgcac
atcctgcgcatcctcgaagaggaagcgatgaaggaaaacaccggcgccgtacacgttcag
gttccggtcgatgtcgccaccttcctgctcaacgagaagcgcccggacatccaggccatt
gaattgcgccacaaggtcaccattctgctgatccccaacgtgcacctggaaaccccggcg
cacaccatcgcccgcctccgccacgacgacctcaaccacgacgatgcccgcgagccgtcc
tacaagatggtcgatatgccggttgaagaagcggttgcccgcaacgcccagaacgaaacc
gcaaaaccgcgccaggaagccgtggtcaagggaatctcccccgagcaaccggctccggtc
gtcgccgagaagccggtggcgccgcctgctgccgaagtcaagccgagcgccggcctgatt
gcccgcatcatgtcctggtttggcagcaccaaggaagaggctgctccggctacgccgacc
cagaccgaggcccccaagaagagccgcgaaggtcgccgcgaacgcaatgaaggtcgcgac
aaccgccgcaacaatcgcaacaaccgtcgtgacgaagagcgaggtgaacgcccggagcgt
agcgaacgcgcggaaaaaccggcccgcgacgagtcgaccgtaaatagcgcagaacgtcag
gaacgccgccagcgcaataacgagcaacgtcgcgaaaagcgcgaacgacagcaagcgcag
gaagtagccgccagcaccgaaagcacggtcgccagcaacgccgtgccaaacgctgtccct
gccctcgaacagagcgcagcaaatggcgaggagtccggcaaccgccggcgcggtcgccgt
ggcggccgtaatcgcggagaacgtcgccaggaaagcgagcaaggtgaaaacctgaacttg
caagccgtggcatccgataccgctgcccaccccgagctcaaccaggaaccggtggtcgtc
gtcatcccggcagccatcgaacctgccaccagcgccgccccggtagccccggaagcagtt
gctgcaaccccggcaccggatgcagcaccggcagcaccagaagctactaccgaagccccg
gcaattgcaccggcaagcgcgccgttgccgcacgccgaaccgcaagcaccggcagccgag
gccgctgcgacggaagctcctccggcggcaccggtaattcttggcgaagcgccgcagaca
caaccggaaactgctccggctggcacgcccgaaatcccgaccgcaccggtaccagccgct
gctgcaccgcaggcaccggaaccggcagaggcaagcgcaccggcaccagccgaagcaagc
gcaccggcaccagccgaagcaagcagcccggcagagttgccggcagctgctccgctaacc
gccaatgtcgaacaggccttagccgaaagtggtctggtcatggtgcaaaccacttccagc
gccgccccggttaccagcgaagtacctgtcaagcttggccgcccgcgcaaggcacgcagc
gtcaatgttgaaagcgaacccctggtcatggttgaaaccggcaacaagtaa
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