Desulfurivibrio alkaliphilus: DaAHT2_0011
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Entry
DaAHT2_0011 CDS
T01244
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
dak
Desulfurivibrio alkaliphilus
Brite
KEGG Orthology (KO) [BR:
dak00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dak03016
]
DaAHT2_0011
Enzymes [BR:
dak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
DaAHT2_0011
Transfer RNA biogenesis [BR:
dak03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
DaAHT2_0011
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GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Corona_NS2A
Motif
Other DBs
NCBI-ProteinID:
ADH84728
UniProt:
D6Z571
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All DBs
Position
12947..13486
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AA seq
179 aa
AA seq
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MYRLFTAIDLPPELAARLAAMGFGLPGARWVPEEQLHLTLRFIGEVDGGIFHEIREALAD
VRAEPFTMHLQGFGCFPPRGPARILWAGVEPVPPVAALYRKVENVLVRRGLVAPEKRKFA
PHVTVARLQQAPKSRLGNFLAGNNLYRSEEFTVDQFHLYSSQLTNKGAIHYLEASYDLR
NT seq
540 nt
NT seq
+upstream
nt +downstream
nt
gtgtaccgtttgttcaccgccattgatctgccgcccgagctggcggcccgcctggccgcc
atgggctttggtctgcccggggcccgctgggtgcccgaagagcagttgcatcttaccctg
cgttttatcggcgaggtggacggtggaatattccatgagatccgggaggccctggccgat
gtccgggccgaacccttcaccatgcacctgcagggctttggttgtttcccgccccggggg
ccggcccgcattctctgggccggggtggagcccgtgccgccggtggccgcgttgtatcgc
aaggtggaaaatgtgctggtacgccgggggctggtggcaccggaaaaacgtaaatttgcc
ccccatgtcaccgtggcccgcttacagcaggcgcccaagagccggctgggcaatttcctg
gccggcaacaacctttaccgcagcgaagagttcaccgtcgaccagtttcacctctactcc
agccaactcaccaacaaaggcgccatccactacctggaagccagttacgatctgcgctaa
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