Desulfurivibrio alkaliphilus: DaAHT2_1310
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Entry
DaAHT2_1310 CDS
T01244
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
dak
Desulfurivibrio alkaliphilus
Pathway
dak03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DaAHT2_1310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dak03400
]
DaAHT2_1310
Enzymes [BR:
dak01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DaAHT2_1310
DNA repair and recombination proteins [BR:
dak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DaAHT2_1310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
MFD_D3
Se_S_carrier
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ADH86005
UniProt:
D6Z380
LinkDB
All DBs
Position
1538824..1542363
Genome browser
AA seq
1179 aa
AA seq
DB search
MKQLYNALEQSPTPIEIYGLRGGAAAWLAGRISELNRPLLCLCPDEEESQRLAGDLELFS
HRPVIHYPDLEIPPYAPLQPDPAIIAARLAALYRVLSAEEPFILVAAGPALLHKTMPPAR
LGNLAELLLGGEETDSRQLQERLAGGGYEAVAQVREVGEYSVRGGIIDIFPPGRDFPLRL
DFFGDMVESLRYFDPSSQRSLGQVDEAILLPASDILYPAADSPGHRALLQRFRHLSEEYQ
WHREESKRLTDCLQSRRHFAGSSFFLPLFQPEAVSVLSYLPAGTMVLCLDHPRLQQGLEL
QEARIEANYQEMQAAAKPALPPAELFVNRAEILKRLETLPGARLYPLPPAEADQQRSFAV
GTGNHVLLKQELDLQRRTEGLLTPLVRRIKQWQEQQERVRLACRSERHARQMAQMLASHG
LECRVVPPPCRESATADPNLLLTTAPLSSGFDLAAEKLHWLSETELFGEQRLASGRRRER
TPAVKAADFDELNPGELVVHRRHGIGIYQGLKPIAINGITNDYLTIRYRGDDKLFIPVDQ
INSVGKYKGIAEQQPTLDKLGDKTWLATRNRIKKAVWQVAQDLLKLYAKRQLAPGTSFST
PGELYSELEESFPYDETPGQLKAIDEVLADLQADKPMDRLVCGDVGYGKTEVAVRAAFKV
VEDGGQVAILVPTTVLAEQHAATFRERLTGFPLRVESLNRFRTPAEQKKIVAQLAAGNID
IIIGTHRLLSADIKFRNLGLLIIDEEHRFGVSHKEKLKKMRSGVDVLTLTATPIPRTLQL
SLLGVRDLSVISSPPNLRRTVKTFVARHDDLVIREAIHREMGRDGQVFIVHNRVSSIHEV
AAKVQKLVPEARVAVAHGQMPGKQLEEIMVRFVRREINVLVCTTIIESGLDIPSANTIII
TRADRLGLAEIYQLRGRVGRSSRQAYAYLLVPALDDLAGEARRRLQALMDYNELGGGFKL
ALSDLQIRGGGNILGESQSGNIAAVGYDLYLDLLQKTVLELKQKAGRSAAGAEGSGEALS
EEELAADELDPEIKLQVPAHLPANYISDVNQRYLAYRKITAAGNDEALVDLKDEFTDRFG
PLPAEAENLFDIIALKNRLATLGVSKIEQGPAALVLSFAPTTPVPPERILELVKQGPKGM
RFTPQGRLVSPLPANPSTGVLFSEIKKLLHTLRGNDISR
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagctttacaacgcccttgagcagagcccgacccccatagagatttacgggctg
cggggaggggcggcggcctggctggccgggcggatcagtgaactgaaccgccccctgctc
tgcctctgccccgacgaagaagagagccaacgcctggccggtgacctggagctgttcagc
caccggccggtgatccactaccccgatctggaaatccccccttacgcgcccctgcaaccg
gacccggcaatcattgccgcccggctggccgccctctaccgggtcttaagcgccgaagaa
ccctttatcctggttgctgccggcccggccctgttgcacaaaaccatgccgccagccagg
ctgggcaacctggccgagctgctgctcggtggtgaagagaccgattcccgtcaactgcag
gaacgcctggccggcggcggctacgaggcggtggcccaggtcagggaggtcggcgaatac
agcgtccggggcggcatcatcgacatcttcccaccgggccgggactttcctttgcggctg
gactttttcggcgacatggtggagtctctccgctacttcgacccctccagccagcgctca
ctggggcaggtcgacgaggccattttgttacccgccagcgatattctttatccggcggcg
gactcaccgggccatcgcgccctgctccagcgcttccggcacttgagcgaggaatatcag
tggcaccgggaagagagcaagcgcctcaccgattgcctgcaaagcaggcgccattttgcc
ggcagcagctttttcctgccactgttccaacccgaagccgtttccgtcttaagctacctg
cccgccggcaccatggtactgtgcctggaccaccctcgtctgcaacaggggctggagttg
caggaagccaggatcgaggccaactatcaggagatgcaagccgccgccaaaccggccctg
ccaccggcggaactctttgtcaaccgggcggagatccttaagcggctggagaccttgccc
ggtgccaggctttatcctttgcccccggcggaagccgaccagcagcgcagtttcgccgtc
ggtaccggcaaccacgtcctgctcaagcaggaactggacctgcagcgccgcaccgaaggg
cttttaactcccctggtacgtcggatcaagcagtggcaggagcagcaggaaagggtccgc
ctggcctgccgctcggagcgccacgcccgacaaatggcgcaaatgctggcctcccacggc
ctggaatgccgggtcgtgccgccgccgtgccgggagtcggccaccgccgacccgaacctg
ctgctgaccaccgctccgctgagcagtggttttgacctggcggcggaaaaactccactgg
ctgtcggaaaccgaactgttcggcgagcagcgactggcaagcggccgccgccgggagcga
accccggccgtcaaggcggcggatttcgatgaactcaatcccggggagctggtggtccac
cgccggcacgggatcggcatctaccagggtctgaagcccattgccatcaacggtatcacc
aacgattacctgaccatccggtatcgcggcgacgacaagcttttcatcccggtggaccag
atcaacagcgtcggcaaatacaagggtattgccgagcagcagccgaccctggacaaactg
ggggacaaaacctggctggccacccgcaaccggatcaaaaaggcggtctggcaggtggcc
caggacttgctgaaactttacgccaaacgccagttggcgccaggtaccagtttttccacc
cccggcgagctctacagcgaactggaagagtcgtttccctacgacgaaacccccggccaa
ctcaaggccatcgacgaggtactggccgatctgcaggccgacaaacccatggaccgcctg
gtctgcggcgatgtcggctacggcaaaaccgaagtggcggttcgggcggccttcaaggtg
gtggaagacggcggccaggtcgccatcctggtgcccaccacggtgctggccgaacagcat
gccgccaccttccgggaacggctgaccggtttccccctgcgggtggaaagcctaaatcgt
ttccgtaccccggcggaacagaagaaaatcgtggcccaactggccgccggcaacatcgac
atcattatcggcacccaccggctgctctccgccgacatcaagttccgcaatctggggctg
ctgattatcgacgaagagcaccgcttcggggtaagccacaaggaaaaactgaaaaaaatg
cgcagcggggtggatgtgcttacccttaccgccacccccatcccccgcaccctgcaactt
tccctgctgggggtgcgtgacctttcggtgatcagttccccccccaacctgcggcgcacg
gtaaagacctttgtcgcccgccacgacgacctggtgatccgggaggccatccaccgggag
atggggcgcgacggccaggtttttatagttcacaaccgggtgagcagcatccacgaagtg
gcggccaaagtacagaagctggtacccgaggcccgggtggcggtggcccacggccagatg
ccgggcaagcaactggaagagatcatggtccgctttgtccgccgcgaaatcaacgtcctg
gtctgcaccaccatcattgagtccgggctggatattcccagcgccaacaccatcatcatc
acccgggccgatcgcctgggactggcggagatctaccagttgcggggccgggtggggcgc
agcagccggcaggcctacgcctacctgctggtgccggcccttgatgacctggccggcgag
gcccggcggcggctgcaggccctgatggattacaacgagctgggcggcggcttcaaactg
gccttgagcgatctgcagatccggggtgggggtaacatcctgggggaatcccagagcggc
aatatcgctgcggtggggtatgatctctaccttgatttgttgcaaaaaacggtgctggag
ttgaagcagaaggcgggtcgcagcgccgccggcgccgaaggcagcggtgaggctctgagc
gaagaggaactggccgccgacgagcttgatccggaaatcaagctgcaggttccggcccat
ctgcccgccaactatatcagtgatgtcaaccagcgctacctggcctaccgcaagattacc
gccgccggcaacgacgaggccctggtcgacctaaaagatgagttcaccgaccgttttggc
ccactgcccgctgaagcggaaaatctgttcgacattatcgcgctcaaaaaccggctggcc
accctgggggtgagcaaaatagaacaggggccggcagccctggtcctgagttttgccccc
accaccccggtgccgccggaaaggattctggagttggtgaaacaggggcccaaaggcatg
cgcttcaccccccagggccgcctggtcagcccgctgccggccaaccccagcaccggcgtg
ctcttcagtgaaatcaaaaagttgttgcacaccctccgggggaatgatatttctcgttaa
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