Desulfurivibrio alkaliphilus: DaAHT2_2248
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Entry
DaAHT2_2248 CDS
T01244
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dak
Desulfurivibrio alkaliphilus
Pathway
dak03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dak00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DaAHT2_2248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dak03019
]
DaAHT2_2248
03009 Ribosome biogenesis [BR:
dak03009
]
DaAHT2_2248
Enzymes [BR:
dak01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DaAHT2_2248
Messenger RNA biogenesis [BR:
dak03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DaAHT2_2248
Ribosome biogenesis [BR:
dak03009
]
Prokaryotic type
rRNA processing factors
DaAHT2_2248
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Antiterm
Motif
Other DBs
NCBI-ProteinID:
ADH86913
UniProt:
D6Z6E8
LinkDB
All DBs
Position
complement(2616983..2619088)
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AA seq
701 aa
AA seq
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MSDERSRSVLDRVSKWLGRKKETNTQDHNPEENGIMPADQNQDAPSSNPSGNKQPGGDKK
EPAAVAAGDGNGDTSEAAKKTTKSPSARRREQRARAKERAAKAAANGETPPAEDKPAAAE
SPVAEAKTAGAAKASGGRGKGRGTAKAATKAGDKSAAKPTAKKPAKEAAAKSDEPAAKAK
TAKSGGGKKSAAAAATKSTPKAVVGTSYKLLINTDEPEECRLALVENGKVEGFYIESTSG
AQCKGNIYKGRITSVEANLQAAFVDIGLPKNGFLSFSEIHPEYYEKEVDPDTNWKSLKIQ
DMVKKGREVLVEVVKDATGNKGPSLTTYLSLPGRCLVLMPGSDSAGISRKIDDEEQRRKL
REMVEGLNIPEGIGYIIRTASQEITKTALSQDMRFLLNLWTEIKKKGQSTPAPALLYKEQ
NIIARFLRDHYTTDIKEILVDNEEAAEQVKNFLQLLPAAQRKKTTVKLHQGSQPIFHQYH
VEKQIEQMFQPTVPLSSGGSIVINPTEALVAIDVNSGRTASKDRDFEESIFIANMEAAEE
LARQLRMRDLGGLIVVDFIDMRSAANTREVEKKVRECMKKDKAKVDFSRISKFGLMQISR
QKMAAPIQSSSYKTCPHCEGRGMIRSVENMVLSYLRQIQTGLHQRKANKVLCRLPLDVAQ
YIFNKKREDLLELEKDYQAQIIIEADPQMLAAENRIEFLKE
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgaacgatcacgttccgtgctggaccgggtcagcaaatggctgggccgtaaa
aaggaaaccaacacccaagaccacaacccggaggaaaacggtatcatgccggcagaccag
aaccaggatgcaccaagcagcaatccgtccggcaacaaacagcccggcggcgataaaaaa
gagcctgcggccgttgccgccggcgacggcaacggcgacacctctgaagctgccaagaaa
acgactaaaagcccctcggccaggcggcgggagcagcgggcccgggccaaggagcgggcc
gccaaggctgcggccaacggtgaaactccgccggccgaagacaaaccggcggccgccgaa
tccccggtggcggaagctaaaaccgccggagccgccaaagcttccggcggccggggcaag
ggtcgcggcaccgccaaagcggcgaccaaggccggcgataaaagcgccgccaagcccacc
gccaaaaaacccgccaaggaggcggcagccaaaagcgatgagccggcggccaaggctaaa
accgccaaaagcggcggcggcaaaaaaagcgcggcggccgccgccaccaaatctaccccg
aaggccgtggtcggaaccagctacaaactgctgatcaacaccgacgagccggaagagtgc
cgtttggccctggtggaaaacggcaaggtggagggtttttacatcgaatccaccagcggc
gcccagtgcaaaggcaacatctacaagggccggatcacctcggtggaggccaacctgcag
gcggccttcgtcgacatcgggctgcctaaaaacggctttttgtccttcagcgagatccac
cccgagtactacgaaaaagaggtggacccggacaccaactggaagagtttgaaaattcag
gacatggtcaagaagggccgggaagtactggtggaggtggtaaaagacgccaccggcaac
aaaggccccagcctgaccacctatctttctttgccgggccgctgcctggtgctgatgccg
ggcagtgattccgccggcatctcccgcaagatcgacgacgaggaacagcgccgcaagctg
cgcgagatggtggaggggctcaacatccccgaggggatcggctacatcatccgcaccgcc
agccaggagatcaccaagaccgccctgagccaggacatgcgctttctgctcaacctctgg
accgagatcaagaaaaagggccagagcaccccggccccggccctcctctacaaggaacag
aacatcatcgcccgcttcctgcgcgaccattataccaccgacatcaaggagatcctggtg
gacaacgaagaggccgccgagcaggtgaagaattttctgcaactgctgccggcggcccag
cgcaaaaagaccacggtcaaactgcaccagggcagccagccgatcttccaccagtaccac
gtggaaaagcagatcgagcagatgtttcagcccaccgtgcccctgtcttccggcggcagc
atcgtcatcaaccccaccgaggccctggtggccatcgacgtcaactcgggccgcaccgcc
tccaaagaccgggattttgaagaaagcatcttcatcgccaacatggaggccgccgaggag
ctggcccgccagttgcggatgcgggacctgggcggcctgatcgtggtggacttcatcgac
atgcgcagtgccgccaacacccgggaggtggaaaaaaaggtgcgggagtgcatgaaaaag
gacaaagccaaggtggatttctcccgtatctccaagttcggcctgatgcagatctcacgg
cagaagatggccgctcccatccagagcagcagctacaagacctgccctcactgcgagggc
cgggggatgatccgctcggtggaaaacatggttttgagctacctgcgccagatccagacc
ggcctgcaccagcgtaaggccaacaaggtgctctgccgcctgcccctggatgtggcccag
tatatcttcaacaagaaaagggaagatttgctggagctggaaaaggattaccaggcacag
atcatcatcgaagccgacccccaaatgctggcggcggaaaaccggatcgaatttctgaaa
gaataa
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