Desulfatibacillum aliphaticivorans: Dalk_1920
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Entry
Dalk_1920 CDS
T00813
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dalk_1920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dal03021
]
Dalk_1920
03400 DNA repair and recombination proteins [BR:
dal03400
]
Dalk_1920
Enzymes [BR:
dal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dalk_1920
Transcription machinery [BR:
dal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dalk_1920
DNA repair and recombination proteins [BR:
dal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dalk_1920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Rotamase_2
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ACL03617
UniProt:
B8FEU0
LinkDB
All DBs
Position
complement(2495011..2499489)
Genome browser
AA seq
1492 aa
AA seq
DB search
METIYDFFAKPMDPRKYGAVAIALASPDRIMEWSHGEIKKPETINYRTFKPERDGLFCAK
IFGPTKDYECNCGKYKRMKHRGVICEKCGVEVIQSKVRRERMGHIQLATPVAHIWFLKSL
PSKLGNILDLTLKNLEKVLYFDSYIVTNPGDTTLEKGQLLSEDKYIEARELHGYGFEAQM
GAEAVQELLKDFDVEKIYKELREEIATTGSEARRKKLAKRLKVVDAFRNSGINPSWMIMN
VIPVLPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLQRLMDLRAPDIIVRNEKRMLQ
EAVDVLFDNGRQGKVVTGTNKRPLKSLSDTLKGKQGRFRQNLLGKRVDYSGRTVITIGPN
LRLHQCGLPKKMALELFKPFVYHRLEEKGLVSTVKSAKKMVEREGPDVWDTLDEVVKEYP
VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSMEAQIEA
RSLMLSSNNILSPANGAPIIVPTQDIVLGIYYMTRDAGESRGDGAAFGNPEEVRVAYDSG
QVDLHAKIKVRMEKGKDMVDTTVGRVLLWEVIPKATLMVLRHIVVNSADKAAQVEKALAD
AKTDKDFKELVRKYSEGRDKLYDGNLGLLKHDEVKSVFRLSGKDVEKLTAAEPGDMIGPL
TEKNKYHFFHIITKRDEPGFSVVNRVMNKGALRGVVDHVYRAMGAKTTVILSDRLKDLGY
RFSTEGGLSICIGDMKIPATKWQILETARNQVEEIEVQYSEGLITQGEKYNKVVDIWAKA
TEDVANEMMDSMKASTDEGELGRTKGPGSNAIFMMADSGARGSRDQMRQLAGMRGLMAKP
SGEIIETPITACFREGLSVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVSQDCVIS
EIDCGTMGGVEVEPLMEGGEVIQRLGDRILGRTATEDILDPNPEPDVDPLIVAAGDEIDE
AAVDRIENSGIAKVRIRSALTCKSTYGICATCYGRDLAHGKKVEIGQAVGILAAQSIGEP
GTQLTMRTFHIGGTASRRVEQADIRARVGGTVRYVELNVVENAQGEYIVMDRKGGEFIIE
DENGRERERCPVIYGARIKCRDGAEVQAGELLALWDPFTTPILTEVEGVVKFADIVAGKT
MQEKVDAVTGKASRVITEYKDADTRPRITIRTEEGKAATLPRSGAPARYPLPVEAILLVE
EGVPVKAGDVIAKLPRATTKTKDITGGLPRVAELFEVRKPKEVAVLSEIDGYVSISKGTK
GKQKVTVTPTVGEKKEYLIARGKHISVYDGDYLRAGDPLMGGSANPQDILSIKGEVALAR
YLVDEVQEVYRLQGVRINDKHIEVIVRQMMRCVKVRSSGDTEFIFDERVDRGRYQRENQV
VIANGGQPAVAEPLILGITKASLSTESFISAASFQETTKVLTEAAIAGAHDSLRGLKENV
IMGRIIPAGTGLLKYAEIDIGLEQEEMEDETSAAARDLLELEAAAAEIADLS
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
ttggaaactatttacgactttttcgcaaaacccatggatcccaggaagtacggggctgtc
gccatcgccctggcttcccccgatcgcattatggaatggtcccacggcgaaataaaaaag
ccggaaaccattaactacaggacgttcaagcctgagagggacgggcttttctgcgccaag
atcttcgggccgaccaaggactatgagtgcaactgcggcaagtacaagcgcatgaagcac
aggggggtgatctgcgagaaatgcggggttgaagtcattcaatccaaggtccggcgcgag
cgcatgggccacatccaactggccactccggtggcgcacatctggtttttaaaaagcctg
cccagcaagctgggcaacatcctggacctgaccctgaagaatctggagaaggtcctgtac
tttgattcctatattgtaacgaacccgggagacacgaccctggaaaagggccagctcctg
tctgaagacaaatatatagaagccagggagctccacggctacggctttgaagcgcaaatg
ggcgcggaagcggtccaggaactgctcaaagattttgacgtggagaagatttacaaggaa
ctgcgcgaggaaatcgccaccacgggctccgaagccagaagaaagaagctggccaagcgt
ttgaaggtggtggatgcgttcaggaattcaggcatcaatccttcctggatgatcatgaac
gtcattcccgtgctgcctccggatctcaggcccctggtccccctggaaggcggacgtttc
gccacttcggacctgaacgacctgtatcgccgggtcatcaacaggaacaaccgccttcag
aggcttatggacctgcgtgcgcccgacatcatcgtgcgcaacgaaaaacgcatgctccag
gaagccgtggacgtgctgtttgacaacggccgtcagggcaaggtggtcacgggaaccaac
aagaggcccctcaaatccctttccgatacattgaaaggcaagcagggccggttccgccag
aacctcctgggaaaacgcgtggattactccggccgtacggtcatcaccatcggccccaac
ctgcgcctccaccagtgcggccttcccaaaaagatggccctggagcttttcaagcccttt
gtctaccatcgcctggaggaaaaaggcctggtatccacggtgaagagcgccaagaaaatg
gtggagcgggaaggaccggacgtctgggacaccctggacgaggtggttaaggaatatccc
gtgatgctcaaccgcgctcccacgctgcaccgcttgggcatccaggcttttgagcccacc
ctgattgaaggcaaggccattcagcttcaccccctggtctgcaccgcattcaacgccgac
tttgacggcgaccagatggcggtgcacgtgcctctttccatggaggctcagattgaagcc
cggtccctgatgctgtcttccaacaatattttgtccccggccaacggcgcgcctattatc
gtgcccacccaggacatcgtgttgggaatctattatatgacccgggacgccggggagagc
aggggcgacggcgccgccttcggcaatcccgaagaagtccgcgtcgcctacgactccggc
caggtggatctgcacgccaagatcaaggtccgcatggaaaagggcaaggacatggtggat
accaccgtgggccgcgtcctcctttgggaggtcattcccaaggccactctcatggtcctg
cgccacattgtggtgaactccgccgacaaggccgcccaggtggaaaaagccctggccgac
gccaagacggacaaggacttcaaagagttggtcagaaagtactcggaaggccgcgacaag
ttgtatgacggcaacctgggtcttttgaagcacgacgaagtcaagagcgtattccggctg
agcgggaaagacgtggaaaaactgacggccgcggagcccggcgacatgatcggccccctg
accgagaagaacaagtaccatttcttccatataatcaccaagcgggatgagcccggcttc
tccgtcgttaacagggtcatgaacaagggcgcattgcgcggcgttgtggaccatgtatac
cgcgccatgggcgccaagaccacggttattctctccgaccgtttgaaggacctgggatac
aggttctccacggaaggcggtctgtccatctgcatcggcgacatgaagattcccgccacc
aagtggcagattcttgaaaccgccagaaaccaggtggaagagatcgaggtgcaatattcc
gaaggtctcatcacccagggcgagaaatacaacaaggtggtggacatctgggccaaggct
acggaagacgtggccaacgaaatgatggactccatgaaggcctctaccgacgaaggcgag
cttgggcgcaccaaaggccccggctccaacgctatcttcatgatggccgactccggcgcc
cgcggctcccgcgaccagatgaggcagttggccggcatgcgcggactgatggccaagcct
tcgggcgaaatcatcgaaacgcccattacggcgtgtttccgtgaaggcctgtccgtgctg
cagtacttcatctcaacgcacggcgcccgcaagggtctggcggatacggctcttaagacg
gccaactccggttacctgacccgccgccttgtggacgtttcccaggactgcgtgatttcc
gaaatcgactgcggcaccatgggcggcgtggaagtggagcccctcatggaaggcggcgaa
gtcatccagcgtttgggggacagaatcctgggccgtacggccacggaagacatcttggac
cccaatcccgagccggacgttgatcctttgatcgtggcagccggggacgaaatcgatgaa
gccgccgtagatcgcattgaaaactcgggcatcgccaaggtccggattcgttcggccctg
acctgcaagtccacttacggcatttgcgccacctgctacggccgcgatctggcccacggc
aagaaagtggaaatcggccaggccgtcggcatcctggccgcccagagcatcggcgagccc
ggcacccagttgacaatgcgtacattccatatcggcggtacggccagccggcgcgttgag
caggcggacatccgggcgcgcgtaggcggcacggttcgctacgtggagctgaacgtggtt
gaaaacgcccagggcgagtacattgtcatggaccgtaagggcggcgagttcatcatcgaa
gatgaaaacggccgcgagcgtgaacggtgcccggtcatctacggcgcccgcatcaagtgc
cgggacggcgcagaggttcaggcgggcgaactgctggctctgtgggatccttttaccacg
cccattcttacggaagtggaaggcgtggtgaagttcgccgacattgtggcgggcaagacc
atgcaggaaaaggtggacgccgtcaccggcaaggcgagccgcgtcatcacggaatacaag
gacgcagacacccggcccaggatcaccatccggacggaagaaggcaaggccgccaccctg
cccaggtccggcgctccggccaggtatcctttgcctgtggaagccattctcctggtggag
gaaggcgttccggtgaaggccggcgacgttatcgccaagctgccccgcgccaccaccaag
accaaggacatcacaggcggtctgcccagggtcgcggagctttttgaagtccgcaaaccc
aaggaagtggctgttctgtcggaaattgacggatacgtttccatctccaagggaaccaag
ggcaagcaaaaggttaccgtcacccccacggtgggcgagaaaaaggaatacctcatcgcc
aggggcaagcatatcagcgtgtacgacggcgattatctcagggcgggcgaccccctcatg
ggcggatccgccaaccctcaggacattctgagcatcaagggcgaggtcgccctggccaga
tacctggtggacgaggtccaggaagtgtaccgcctccagggcgttcgcatcaacgacaag
cacattgaagtcatcgtgcgccagatgatgcgctgcgtgaaggtccgcagctccggagat
acggaattcatctttgacgaaagggtggaccgcggccggtatcagcgggaaaaccaggtc
gtcatcgccaacggcggacagcccgccgtagccgagcctttgattctgggaatcaccaag
gcctccctgagcacggaaagcttcatttccgcggcttctttccaggaaaccaccaaggtc
ctgaccgaagcagccattgcaggcgctcacgactctctgcgcggattgaaggaaaacgtg
atcatggggcggatcatcccggccggcacggggcttttgaagtacgctgagatagacatc
ggactggaacaggaagaaatggaagacgagacttccgcggcagccagggacctgttggag
ctggaagcggcggcggcggagatcgcggatctttcctaa
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integrated database retrieval system
