Desulfatibacillum aliphaticivorans: Dalk_1921
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Entry
Dalk_1921 CDS
T00813
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Dalk_1921
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dal03021
]
Dalk_1921
03400 DNA repair and recombination proteins [BR:
dal03400
]
Dalk_1921
Enzymes [BR:
dal01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Dalk_1921
Transcription machinery [BR:
dal03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Dalk_1921
DNA repair and recombination proteins [BR:
dal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Dalk_1921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Hydin_ADK
Peptidase_M23
Peptidase_C31
Motif
Other DBs
NCBI-ProteinID:
ACL03618
UniProt:
B8FEU1
LinkDB
All DBs
Position
complement(2499547..2503641)
Genome browser
AA seq
1364 aa
AA seq
DB search
MADRPLTQQRLRKSFGKIAKIVDIPNLIEMQRISYQRFLQMDVPPEKRETIGLQAVFHSV
FPIRDFSGTASLEFVSYRFGEIKYSVEDCVHRGMTYEVPIRITVRLVVFDVDKEKGIQNI
RDIKEQEIYFGTIPLMTEQGTFVINGTERVVVSQLHRSSGVFFDHDKGKSHASGKVIYTA
RIIPVRGSWIDMEIDPKDVLYIRIDRRRKFPATLLFKAFGYSTEDLLNYFYQTEKLTLTP
KTLFKEFDAKTLRGQRASITVKMPDSDEVIVKKGRLFTQRAVKTMAQAGIEKVAILQEDL
EDKVLARRVLDPKTGEVLYPANHEIDEATLEAMRDAGVQKFEILYSAPGTGGDSVRKALL
LDKVESREEALVEIYRRLRPSNPSTVEVAKDFIDQLFFRPSHYDLSAVGRMKLNMRLGLD
TPVEVKTLRREDILLTAKTLVDLKDSQGAVDDIDHLGNRRVRAVGELLENQYRIGLVRME
RAIKERMSLQEIDALMPNDLINPKPVSAVVKEFFGTSQLSQFMDQTNPLSEVTHKRRLSA
LGPGGLTRERAGFEVRDVHPSHYGRICPIETPEGPNIGLIVSLSTYARVNEFGFVETPYR
VVTEGQATKEIKYLSAMEEKDLPIAQANAPLDEEGFFINPTVSSRVEGELTIVKKEDVKL
MDISPNQLVSVSSSMIPFLENDDANRALMGSNMQRQAVPLLATEAPLIGTGLERVVARDS
GVTLVAKRDGKVVAVDASRIVLQHEDERKDRMDKQVTIYNLSKFTRSNQNTCFNQRPIVK
LGQEVKAGDIIADGPATENGELALGRNVTVAFLPWGGYNFEDSILVSERLVRDGVFTSVH
IEEFEVVSRDTKLGKEEITRDIPNVGEEALKNLDDSGIVRLGAEVRPGDILVGKITPKGE
TQLSPEEKLLRAIFGEKAGDVKDTSLRVPPGVEGVVVDAKVFARRGVEKDDRTRLIEDEE
IAALEKDRDDELKIMEDTVRSKLITIVLGQEATAPVKKGKAVLIPKGQPITAEMLEDCPL
APLEALVLKDEDHSERVHELLEIYREQRESVQMSFEEQVNRYQKGDDLPPGVIKMVKIYV
AMKRRLSVGDKMAGRHGNKGVVSCILPQEDLPYFENGTPVDMVLNPLGVPSRMNVGQILE
IHLGRAAKSLGDQIEALLEEQKLDGLRQKMQEIFSSDADEVAGLTEQELLEVAGQYKRGV
HMATPVFDGAKEDEITDLLSSAGVSPSGQAVLYDGRTGERFKGEITVGTMYMLKLHHLVD
DKIHARSIGPYSLVTQQPLGGKAQFGGQRLGEMEVWAMEAYGAAYALQEFLTVKSDDMVG
RTRMYEKIVKGQNVLEPGMPESFNVLVKELQSLGLEMSLIEEAK
NT seq
4095 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggcccttgacgcaacagcgtttacgaaaaagtttcggcaagattgccaag
atcgttgatattcccaacctcatcgagatgcagcgcatctcctaccagaggttcctccaa
atggacgtgcctccggaaaaaagggaaaccatcgggcttcaagcagtatttcactcggtg
tttcctatccgggacttctccggcaccgcttcactggaattcgtctcgtaccgtttcggc
gagataaaatattcggtggaggactgtgtgcatcgcggcatgacctacgaggtgcccatt
cgcatcacggttcgactggttgtctttgacgtagacaaggaaaaaggcatccagaacatt
cgcgacatcaaggaacaggaaatttatttcggcaccattcccctcatgacagaacaaggc
acctttgtcataaacggcacggagagggttgtggtcagccagcttcatcgttcctcgggc
gtctttttcgaccatgacaaaggcaagagccacgccagcggcaaggtcatctataccgcc
aggatcattcctgtgcgcggctcctggatcgacatggaaatcgatcccaaggatgtcttg
tacatccgcatcgaccggcgcagaaagttccctgcgacgttgcttttcaaggccttcggg
tacagcaccgaagaccttttgaactatttctaccagacggaaaagttgacgttaaccccc
aagaccctgttcaaggaattcgatgcgaaaaccttgcggggccaacgggccagcatcacc
gttaaaatgccggattccgacgaagtcatcgtgaagaaggggcgtctgttcacccagcgg
gccgtgaagaccatggctcaggccgggatcgaaaaggtggctattcttcaggaggacctg
gaggacaaggtgctcgccagaagggttttggatcccaagaccggcgaagtgctttatccg
gcgaaccacgaaattgacgaagccaccctggaagccatgcgcgacgccggggttcagaaa
ttcgagattctgtacagcgcccccggcacgggcggcgattcggttcgcaaggccctgctg
ctggacaaggtggaatcccgggaagaggctctggtggaaatctaccgccgcctgcgtccc
agcaatccctccacggtggaggtcgccaaggatttcatcgatcagttgtttttcaggccg
tcccactacgatctgtctgcggtgggccgcatgaagctcaacatgcgcctgggcctggac
acccccgtggaagtgaagacgcttcgccgggaggacatccttctcaccgccaagaccttg
gtggacttgaaggacagccagggcgccgtggacgacatcgaccacctgggcaaccgccgc
gtcagagccgtgggcgaattgctggaaaaccagtatcgcatcggcttggtgcgtatggaa
agggctatcaaggagcgcatgagcctccaggaaatcgacgccctgatgcccaacgacctg
atcaatcccaaaccggtctcggccgtggtcaaggaattcttcggcaccagccagctttcc
cagttcatggatcagaccaaccccttgtcggaagtcactcacaagagacggctttcggcc
ctgggacccggcggcctcacccgcgaacgcgcgggctttgaagtgcgcgacgtacacccg
tcccattacggcagaatctgccccattgagacccctgaaggccccaacatcgggttgatc
gtctccctctccacttacgcccgggtcaatgaattcggctttgtggaaaccccctaccgg
gtggtgacggaaggccaggcgaccaaggaaatcaaatatctttccgccatggaggaaaag
gacctgcccattgcgcaggccaacgcccccctggacgaagaaggttttttcatcaacccc
accgtgtcctcgcgcgtggaaggcgaactgaccatcgtgaagaaggaagacgtcaagctc
atggacatttcgcccaaccagcttgtgtccgtgtcttcttccatgattcccttccttgaa
aacgacgacgccaaccgcgctctcatgggctccaacatgcagcgccaggcggttcctttg
ctggctacggaagcgccgctcatcggcacgggcctggaacgggtcgtggcccgggactcc
ggcgtcaccctggtggccaaacgcgacggcaaggtcgtggccgtggacgcctcccgcatc
gtcctgcagcatgaggacgaacggaaggacaggatggataagcaggtcaccatttataac
ctgtccaagttcacccggtccaaccagaacacctgcttcaaccagaggcccattgtcaag
ctgggccaggaagtaaaggcgggggacatcattgcggacggccccgccacggaaaacggc
gaactggccctgggccgcaacgtcaccgtggcctttcttccctggggcgggtacaacttt
gaggactccattctggtctccgagcgccttgtgcgcgacggcgtgttcaccagcgtgcat
atcgaggaattcgaagtggtttcccgggacaccaaactggggaaagaggaaatcacccgg
gatattcccaacgtgggcgaggaagccctcaaaaacctggacgactcgggcattgtccgc
cttggcgcggaagtcaggcccggcgacatcctggtgggaaaaatcactcccaagggcgaa
acccagttgtcgcccgaggaaaaacttctgcgcgccattttcggtgaaaaggccggcgac
gtcaaagacacctccctcagggttccccccggagtggaaggcgttgtggtggacgccaag
gtcttcgcccgcaggggcgttgaaaaagacgaccgcacccgtttgatcgaagacgaggaa
atcgcagccctggaaaaagacagggacgacgaactcaagatcatggaggatacggtccgt
tccaagctcataaccatagttctgggccaggaagccacggcgcctgttaaaaaaggcaag
gcggtcctgattcccaagggtcagcccatcacggctgaaatgctggaagactgccccttg
gcgcctttggaagccctcgtcctcaaggacgaagatcattccgaaagggtccacgaactg
cttgaaatatatagggagcaacgcgaaagcgtgcagatgtcttttgaagagcaggtgaac
cgctaccaaaagggcgacgacctgcctccgggcgtcatcaaaatggtcaagatttacgtg
gccatgaagcgcaggctttccgtgggcgacaaaatggcgggccgccacggcaacaagggc
gtcgtgtcctgcattttgccccaggaagatcttccctactttgaaaacggcaccccggtg
gacatggttctcaatcccctgggcgttccctcgcgtatgaacgtgggccagattctggaa
attcatctgggccgtgcggccaaaagcctgggcgaccagatcgaggccctgttggaagag
cagaagctcgacggcctgcgtcagaagatgcaggagattttctcctcggatgcggacgaa
gtcgcgggcctgactgaacaagaactgctggaggtggccggccagtataaaaggggagtg
cacatggcgacgcctgtttttgacggcgccaaggaagacgagatcacggatctcctttcc
agcgcgggcgtgtctccctctggccaggcggtgctgtacgacggccgcaccggtgagcgc
tttaagggcgagatcacggtgggcaccatgtacatgctcaaactccaccacttggttgac
gataaaatccatgcccgttccattgggccttattctctggtaacgcagcagcctctgggc
ggcaaggcccaattcggcggccagagactgggtgaaatggaagtctgggccatggaggca
tatggagcggcgtacgccctccaagagttcctgaccgtcaagagcgacgatatggtcgga
cgcacccggatgtacgagaagatcgtcaaggggcagaacgtcctggagccgggcatgccc
gagtccttcaacgttctggtcaaggagctgcagagtctgggtctggaaatgagcctgatt
gaagaggccaaataa
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