Desulfatibacillum aliphaticivorans: Dalk_1956
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Entry
Dalk_1956 CDS
T00813
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
dal
Desulfatibacillum aliphaticivorans
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dal03016
]
Dalk_1956
Enzymes [BR:
dal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
Dalk_1956
Transfer RNA biogenesis [BR:
dal03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dalk_1956
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GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
ACL03652
UniProt:
B8FEX5
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All DBs
Position
complement(2540609..2541775)
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AA seq
388 aa
AA seq
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MPNKPVLHKPEDPDFVLVDNDNALADLTQSLQSQKCIAVDLEADSMFHYQEKACLLQITS
NGLNYIVDPLCDCDVKALAPILENDEIQKIFHGADYDVRCLFRDFGIELHNLFDTQVAAR
FLGEPQTGLAPLLESRFGVQLEKKYQKKNWSLRPLPPEMMAYAANDTVHLLELAEILKKE
LVEKDRLFWVEEECEILTHARPMPPNDGPLFLRFRGAGKLDPRSLQVLENILHVRDDLAK
KWNRPLFKVLGNTPILEMAQKRPLNTKGLVSLHGFSPKQAKMFGHELIRAIKAGKSVPDE
KLPSYPRKKRPPLNPKAPKRAKVLKDWREKMGEELGVESSVVLTNAQIQAMASNKPRSIR
ELDECQEVRQWQKKVFGQTLVELLKAVP
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgcctaataaacccgttctccataaacccgaagaccctgattttgttctagttgataat
gacaacgctctggccgatttgacccaaagcctgcaatcgcaaaaatgcatcgccgtggac
ctggaagcggactccatgttccattaccaggaaaaggcctgcctgctgcaaattacttcc
aacggtttgaactatattgtagaccccctgtgcgactgcgacgtcaaggctctggcgccc
atcctggaaaacgacgaaatccagaagatcttccatggagcggattacgacgtgcgctgc
ctgttccgggattttggcattgaactccacaacctgttcgacacccaggtggccgcccgt
tttctgggagagccccaaaccggcctggcgccgcttttggaaagccggttcggcgtgcag
ctggaaaagaaataccagaagaaaaactggtccctccggccactgccgcccgaaatgatg
gcctacgccgccaacgacaccgttcatcttttggaactggccgagatcctgaaaaaggaa
ctggtggaaaaggaccgcctgttctgggtggaggaggaatgcgaaatcctgacccacgcc
cggcccatgccgcccaatgacggccccctgttcctccggtttcgcggcgccggcaagctg
gatccccgaagccttcaggtgctggaaaacatcctccacgtccgggacgatctggccaaa
aaatggaaccggcctttgttcaaggtcctgggcaacacgcccatcctggaaatggcccaa
aaacgcccgctcaacaccaaagggctggtgtcccttcacggattttcgcccaaacaggcc
aagatgttcggacacgaactcatccgggcaatcaaggcgggcaaatccgtgcctgatgaa
aaactgccctcctacccgcggaaaaaacggccgcccctgaaccccaaagcccccaaacgc
gccaaggtcctcaaggactggcgggagaaaatgggcgaggaactgggcgtggaatcctcc
gtggtgctcaccaacgcccaaatccaggccatggcctccaacaagccaagatccatcagg
gagcttgacgaatgtcaggaagtccggcaatggcagaaaaaagtcttcggccaaaccctg
gtggaactgcttaaagccgtgccctga
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