Desulfatibacillum aliphaticivorans: Dalk_2458
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Entry
Dalk_2458 CDS
T00813
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dalk_2458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dal03019
]
Dalk_2458
Enzymes [BR:
dal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Dalk_2458
Messenger RNA biogenesis [BR:
dal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dalk_2458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
UTP25_NTPase-like
AAA_19
Flavi_DEAD
Utp25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ACL04151
UniProt:
B8FF91
LinkDB
All DBs
Position
3195630..3196922
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AA seq
430 aa
AA seq
DB search
MNFTNFGFHKHVAAGISAAGYSTPTPIQEKAIPQVMQGRDLMGLAQTGTGKTAAFVLPIL
HRLMQKPGNGVRALIIAPTRELAEQTHEAINTLGAHTNLKSVSVYGGVNLQRQVKQLKQS
DIVVACPGRLLDHIGRKNVDLSRVEMLVLDEADQMFDMGFLPDIRKILTFLPRKGRQTLM
FSATMPAQIKRLAGEVLHNHVLVQIGHVAPADTVKHAFYPVAQHLKTALLLQLLGSTGTE
SVLVFTRTKYKAKQLGNKLTKAGFSSASLQGNLSQSRRVDAMNGFKSGKYQVLVATDIAA
RGIDVANVSHVINYDMPSTPETYMHRIGRTGRAKRRGEAFTFITNDDRQMVRAVNRAVGS
NVEQRTIHDFNYQASTPETGRQAAQATPRQPMKKKKSRQDFPPVEVRRKSDSKRRANREA
KGAFTWVSAG
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttaccaattttggttttcataaacacgtcgccgccggaatttccgcggcgggc
tactccacccccactcccattcaggaaaaagcaattccccaggtcatgcagggacgagac
ctgatgggtcttgcccagaccggcacgggaaaaacagcggcttttgtactgcctatcctg
cacaggttgatgcaaaagcccggcaacggggtgcgggcattaattatcgcccccactcgt
gaacttgcggagcaaacgcacgaagccataaataccctgggcgcccacaccaacctgaaa
agcgtgtccgtatacggaggcgtaaacctccaacgccaggtgaaacagcttaaacaatcc
gatattgtcgtggcctgtcccggccggctgcttgaccatattggacggaaaaatgtggat
ctgtcccgcgtggaaatgctggttctggatgaagcggaccagatgttcgacatgggcttt
ttgccggacatccgcaaaatattgacgtttctgccccgcaaaggacgtcaaaccctcatg
ttctcggccaccatgccagcgcaaatcaaacgactggccggggaggtccttcacaaccat
gttttggttcagattgggcatgtggctccggcggataccgtcaaacacgccttttatccc
gtggcgcagcacctgaaaacagccttgctcctgcaattgttaggcagcacgggcacggag
tcggttttagtgttcacccgcaccaaatacaaagccaagcaattggggaacaagctgaca
aaggccggattcagctccgcgtccctccaagggaatttgtcccagtcccggagggttgac
gccatgaacggattcaaatccggcaagtaccaggtgctggtggcgacggatatcgccgcc
cggggcatagatgtggccaacgtctcccatgtcatcaattatgacatgccctcaactcct
gaaacctatatgcacagaatcggcaggaccggcagggccaaacgccgcggtgaagcattt
acttttatcaccaatgacgaccggcaaatggtccgggccgtcaaccgggccgtcggctcc
aatgtggagcagcgcaccatccacgattttaactatcaggcatccacgcctgaaacaggc
cggcaggcggctcaggccacgccccgtcaacctatgaaaaagaaaaagtcccggcaagat
tttccccctgtggaagtacgcagaaagagcgactccaaaaggcgggccaacagagaggcg
aaaggggcttttacctgggtttcagccgggtaa
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