Desulfatibacillum aliphaticivorans: Dalk_2849
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Entry
Dalk_2849 CDS
T00813
Name
(GenBank) exodeoxyribonuclease V, alpha subunit
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Dalk_2849
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dal03400
]
Dalk_2849
Enzymes [BR:
dal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Dalk_2849
DNA repair and recombination proteins [BR:
dal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dalk_2849
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
NAT10_TcmA_helicase
AAA_11
AAA_22
UvrD-helicase
SLFN-g3_helicase
SH3_13
nSTAND3
DEAD
NPHP3_N
NTPase_1
AAA_16
UvrD_C
AAA_28
Mg_chelatase
TraI_hel_assoc_N
PIF1
AAA
Motif
Other DBs
NCBI-ProteinID:
ACL04539
UniProt:
B8FB95
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All DBs
Position
3667306..3669075
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AA seq
589 aa
AA seq
DB search
MIEFEAIDGQFAAFLQKLAGGSDPVLQSAAALVSLKTREGHTCVELNSGLDQDCLLSPDC
PENPAQWIDALANSPVVGAPGEYRPLILDQAGRLYLHRYYEDQALTAKKILEWSVPDPAY
TDQDRLAQELDRLFTPLPNSETDWQKAAAATAVLRKFSVISGGPGTGKTTIAARIIRLLL
SLADGRAPSIAITAPTGKAAARLLESLGKELSRLGVPPGMEDAIPKRAKTIHRLMGARFN
SSQFIHNADNPINADILIVDEASMVELSLMARLLEALPDHGKLILLGDKDQLASVGPGSV
MGDICSGPGSQAFSPEWARVLAKAAGQAIPSENGLAPIADGIVHLVKNYRFAKDSGIGEL
ADCVVRGDAAGAAASLESGGEIIYEPVNNPRTLPALLEEPLREGFLPFITAKNPAQALEA
FGGFRVLCGVRQGPWGMNSANSLVEDIFARDGLILLRNYPWYEKRPVVVNRNDAEMNLFN
GDHGVYMDGKAAFPGLQEELRHYARSMLPAHDTAFAMTVHKSQGSEFESVLLILPGENSP
VLTRELLYTAVTRTRSRLRIVGAMPSIKKAVLSPTRRPSGLQDALWKTE
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaattcgaagccatagacggtcaattcgccgcgtttctgcagaagctggcgggc
ggctcagacccggtgctgcaatcggccgcggctctggtttcccttaaaaccagggaaggc
cacacctgcgtggagctgaattccgggctggaccaggactgcctgctcagcccggattgc
ccggaaaatccagcgcaatggattgacgccctggcgaattcgccggtggtcggagcgccc
ggggagtatcggccgctcatcctggatcaggcgggcaggctgtatttgcaccggtattat
gaagatcaggcattgaccgccaaaaaaattctggagtggagcgtcccggacccggcctat
acggaccaggaccggctggctcaggaattggatcgtttgttcacccccttgccgaatagt
gaaaccgactggcagaaggctgcggcggccacggcggttctgcgcaagttttccgtaatt
tccggcgggccggggaccggcaagaccaccatcgccgcccggatcatccgcctgcttctg
tccctggcggacgggcgggcgccctccatcgccatcacagcgcccacgggcaaggccgcg
gcaaggcttttggaatccctgggcaaagaattgagccgcctgggcgttccccctggaatg
gaggacgccattcccaaacgggccaagaccatccatcggctcatgggagcgaggttcaac
tccagtcaatttatccacaatgccgacaatcccatcaacgccgatattttgattgtagac
gaagcctccatggtggagttatccctcatggcccggcttttggaagccctgccggatcac
ggcaagctgattttgcttggggataaagaccagttggcctctgtggggccaggctcggtc
atgggcgatatttgctcaggaccggggtcgcaggctttctcaccggagtgggccagagtt
ttagccaaggccgccggacaggcgattccttcggagaatggcctggcccccatagcggac
gggatcgtgcatcttgtgaaaaactaccggttcgccaaggattcgggcatcggcgaactg
gctgattgcgtggtccggggcgacgccgcaggcgcggccgccagcctggagagcggcggg
gagatcatctacgaacccgtgaacaacccgcgcaccctgccggccctactggaagagcct
ttacgggagggctttttgccattcattacggccaaaaatccggcccaggccctggaagcc
ttcggcggattccgcgtcctgtgcggagtgcggcaaggcccctgggggatgaactcggcc
aacagcctggtggaggacatcttcgcccgggacggtctgattttgctgcggaattatccc
tggtacgaaaaaaggccggtggtggtcaatcgcaacgacgcggaaatgaatttgtttaac
ggcgaccacggagtctatatggacggcaaggcggcctttccgggcctgcaggaggagctt
cggcattacgccagatccatgctgcccgcccacgacactgcctttgccatgaccgtgcat
aaaagccaaggatcggaatttgaatccgtactgctgattctgccgggggagaactcgccg
gtgctcaccagggaattgctttatacggccgtcacccgcacccggtccaggctgcggatc
gtgggcgccatgccctccattaaaaaggcggtcctaagccccacccgccggccttccggc
ttgcaggacgcattgtggaaaacggaataa
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