Desulfatibacillum aliphaticivorans: Dalk_2875
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Entry
Dalk_2875 CDS
T00813
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Dalk_2875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dal03400
]
Dalk_2875
Enzymes [BR:
dal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Dalk_2875
DNA repair and recombination proteins [BR:
dal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Dalk_2875
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_RecD2
SH3_13
OB_YrrC
UvrD_C_2
Viral_helicase1
HHH_5
PIF1
AAA_11
SLFN-g3_helicase
PhoH
AAA_28
NAT10_TcmA_helicase
AAA_22
AAA_16
nSTAND3
IstB_IS21
AAA_18
TraI_hel_assoc_N
AAA
HHH_2
NTPase_1
RsgA_GTPase
MeaB
nSTAND_NTPase5
ATPase_2
AAA_29
NACHT
UvrD-helicase
NPHP3_N
AAA_23
ORC-CDC6-like
Motif
Other DBs
NCBI-ProteinID:
ACL04565
UniProt:
B8FBC1
LinkDB
All DBs
Position
complement(3690686..3692878)
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AA seq
730 aa
AA seq
DB search
MPEIQGKVQGITFFNERNMYTIARVDTDNGLKTLVGAMGRLAVGETIKARGEWDVHPRFG
EQFKVDAFEILLPSTTEGVRNYLASGMIRGVGPAMADRIIDHFGEKALEILDESPKRLSE
VKGIGKKKLKGIIADWQDKRTQRNVLMFLASFGIGTAYGVRIFQTYGQETGAIIKDNPYK
LAEDVAGIGFSTADGIARKMGIPADSPKRLEAGVLHALSRASNNGHFYLPREELIHEAAS
LLDQNPSDVDNILSGMWQTGKVIFDKITDDPENPLDIVYLTAYYATEVGLARRIQAFLTV
PLNLKKIKAEEALERVHQRFAIRLSEEQLDVLEKIFGSRISVITGGPGTGKTTLVRSVQL
LFSAMGKSVLQVAPTGRAAKRLAEVTSRDASTIHRALAYDFKTGKFFRNEEEPLDADVII
VDEASMVDAFLMYHLIKAIPMNAVLILVGDVSQLPPVGPGNALRDIIESGQVPVFHLTKI
FRQAAQSLIIRNAHRVNAGEDLVTVRDQSKEDPDFYFLSENDQERMVSLVLTMCRERIPN
RFGFDPMTQIQVLTPMHKGPAGTINLNRQLQKILNPGPDLITRGEQCFRAGDKVMQIKNN
YSKEVFNGDIGAITNVSPSSKSVVVEFDAGPVPYTFSEMEELVLAYAISIHKSQGSEYPA
VIMLLSTAHYALLQRNLVYTGITRAKRLMVLVGSQKAVSLAVGNDTPSRRATRLAHRLRQ
TSPSLVDDDE
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgcctgagatccaaggcaaagtgcagggcatcaccttttttaacgaacgcaacatgtac
accatcgccagggtggacacggacaacggcctgaaaaccctggtgggcgctatggggcgt
ttggccgtgggagagaccatcaaagcccggggcgagtgggacgtccacccccgcttcggc
gagcaattcaaggtggacgcctttgaaatcctccttccctccaccacggagggggtgcgc
aactacctggcctccggcatgatccggggcgtggggccggccatggccgaccgcatcatc
gatcatttcggcgagaaggccctggaaatcctggacgaatccccgaaaaggctttccgaa
gtcaaaggcatcggcaaaaaaaagctcaagggaatcatcgccgactggcaggacaagcgc
actcagcgcaacgttctcatgtttctggccagttttggaataggcacagcctacggggtg
cgcatattccagacctacggccaggaaaccggcgccatcatcaaggacaatccgtacaaa
ctggctgaagacgtggccggcatcggcttttccacggccgacggcatcgcccggaaaatg
ggcatcccggcggattcgcccaaacgcctggaggcgggagttctccacgccctgagccgg
gcttccaacaacggccatttttatttgccccgggaggagttgatacacgaggcggcttcc
ttgctggatcagaacccttcggacgtggacaatatcctcagcggcatgtggcagacgggc
aaggtgattttcgataaaatcacggacgatccggaaaatccactggatatcgtttacctg
accgcctattacgccacggaagtcgggctggcccgccgcatccaggcctttttgaccgtg
cctttgaacctgaaaaaaatcaaggccgaggaagccctggaaagggtgcaccagcgcttt
gccattcgtttgtccgaagagcagttggatgtgctggaaaaaattttcggctcccggatt
tccgtgatcacgggcggtccgggtacgggaaagaccaccctggtccggtcggtgcagctg
ttgttttccgccatggggaaaagcgtgcttcaggtcgctcccacggggcgggcggccaaa
cgcctggcggaggtcacctcgcgggacgcctccaccatccatagggccctggcttacgat
tttaaaacaggcaagttcttccgcaacgaggaagaacccctggacgcagatgtgatcatc
gtggacgaagcctccatggtggacgcctttttgatgtatcacctgatcaaggccatcccc
atgaacgccgtactcattctggtgggcgacgtttcccagcttccccccgtagggccgggc
aatgcattgcgggatatcatcgagtcaggccaggttccggtgtttcatttgaccaagatt
ttcaggcaggccgcccaaagcctgattatccgcaacgcccacagggtcaatgcgggagag
gacctggtcacggttcgcgaccagagcaaggaagacccggatttttatttcctgtccgaa
aacgaccaggaaaggatggtgtccctggtgctgaccatgtgccgggagcgcatccccaac
cggttcgggttcgaccccatgacccagattcaggtgttgacgcccatgcacaaagggcct
gcaggaaccatcaacctcaaccggcagttgcaaaagatcttaaaccccggtccggacctc
attaccagaggggagcaatgcttccgggcgggcgacaaggtcatgcaaatcaagaataat
tactccaaggaggtctttaacggcgacatcggcgccatcaccaatgtaagcccgtcatcc
aaaagcgtggtggtggagtttgacgccggcccggttccctatacgttcagcgaaatggag
gagttggtgctcgcctacgccatttccatccacaagtcccagggatcggaatatccggcg
gtgatcatgctgttgtccacggcccattacgccttgttgcagcgcaatctggtttacacc
ggaataacccgggccaaacgccttatggtgctggtgggcagccaaaaagccgtgtccctg
gccgtgggaaacgacaccccgtcccgccgcgccacccggctggctcacaggctgcgccaa
acctccccgtccctggtggatgatgatgaatag
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