Desulfatibacillum aliphaticivorans: Dalk_3638
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Entry
Dalk_3638 CDS
T00813
Name
(GenBank) Exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dal
Desulfatibacillum aliphaticivorans
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dal03016
]
Dalk_3638
Enzymes [BR:
dal01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Dalk_3638
Transfer RNA biogenesis [BR:
dal03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
Dalk_3638
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
WHD_RNase_II
RNase_II_C_S1
Phage_sheath_1
Motif
Other DBs
NCBI-ProteinID:
ACL05326
UniProt:
B8FGU6
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All DBs
Position
complement(4604665..4606674)
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AA seq
669 aa
AA seq
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MPVVMFVLNMELGTLIEYIDRKKVICAVIMQAKKQKVRLLTQANREVSVSEHRLFCVSGR
LDPEIGRDRLVDLLSETSARREALKAQVNVYDLWEVVHEEEQWIDAETMAGLAFGISPEP
DHVSAVIRAFFNDRVYFKFDVTRFLPHSPEKVEQIQIQEQEMARRAAVVQEGGEWLRRVY
GQESPEVPPDKEQFVSIMRSLYLFEKDSPTYDLGRQMVQAAGIDPNNGLFEFLIRLGVWD
EHANLDLYRMDVPIDFPREISQEANALANGSGFRTDTSQRRDFTGLPVLTIDGQATLDYD
DALSLEMDGDYFRVGIHISDVSHYVERGSLLDQEAFARSSSIYMPDDKIPMFPPLLAEGL
LSLKADQVRPAISVMVRLDRDAVVLDYEICPSLVRVRRQLTYHEVNMMADDDKEIIALSG
LAEKLREKRLDDGAVLISLPEINIWLDEEKNVTLHKVNRESRSRILVSEFMILANRLMAS
FLADHGSPAVFRAQPEPRLRLFDRDNGTLYQNWMQRRHLSRFILCPKPEPHSGLGVDAYV
TATSPIRKYFDLAVQRQIRGVLGLDKKYTQTEVENIIANSEVPLSKVSRVQFVRNRYWIL
KYLETKLGKTEPGMILERRKDRFVALLTDCLVECTLPVASDPSLAPQDAVQLRIVKVDPR
EQFLAVELA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcccgttgttatgttcgtgttaaacatggaacttggaaccttaatagaatatatcgac
cggaaaaaagtaatttgcgcggtcataatgcaggcgaaaaaacagaaggtgcggctactc
actcaggctaatcgcgaggtgagcgtgtctgagcatcgcctgttttgcgtgtccggacgc
ctggacccggagataggacgggaccgccttgtggacctgctgtccgaaacgtccgcccga
agagaggctcttaaggcccaagtgaacgtctatgacctgtgggaagtggtccatgaagag
gaacagtggatcgatgcagaaaccatggccggcttggctttcgggatttccccggagccg
gatcacgtctctgccgtcatccgggcttttttcaatgaccgggtgtatttcaagtttgat
gtcacccgttttttgccccacagcccggaaaaagtggagcagattcaaatccaggaacag
gagatggcgcgccgcgccgccgtggtccaggaggggggcgaatggctgcggcgggtttac
ggccaggaaagcccggaagtgcctcccgacaaagagcagttcgtctccataatgcggagc
ctttacctgtttgaaaaggacagccccacttacgacctgggcaggcaaatggtccaggca
gccgggattgatcccaacaacgggctgtttgaatttctcatccgcctgggagtctgggac
gagcacgccaacctggacctataccgcatggacgtccccatagacttcccccgggaaatc
tcccaggaagccaacgccctggccaacgggtccgggttccgaaccgacaccagccaaaga
agggacttcacggggctgcccgtgctgaccatagacggccaggccaccctggactacgac
gacgccctgagcctggaaatggacggcgactattttagggtgggcatccatatttccgac
gtctcccattatgtggaaaggggctcccttctggatcaagaggccttcgcccggtcaagc
tccatatatatgccggacgacaagatacccatgtttccgcctcttttggccgaaggcctc
ctaagcctgaaggccgaccaggtccggcccgccatcagcgtcatggtccgcctggatcgg
gacgccgtagtcctggactacgagatctgccccagcctggtccgggtgcgccgtcagctc
acctatcatgaagtaaatatgatggccgatgacgacaaggaaatcatcgccctgtccggt
ttggcggaaaaactccgggaaaaaaggctggacgacggcgcggtcctgatttccctgccg
gaaatcaacatctggctggatgaagagaaaaacgtaacccttcacaaagttaatcgggaa
agccgctccagaatcctggtttcggagttcatgatcctggccaatcgccttatggcctct
tttttggcggatcatggaagccccgcggtgtttcgggcccagcccgagccgcgcctccgt
ttgtttgaccgggataacggcaccctgtatcaaaattggatgcaaaggcggcacctttcc
cgcttcatcctttgccccaaacccgaaccccattcaggccttggcgtggacgcctatgtg
accgccacctcccccatacgcaagtattttgatctggcggtgcaaaggcaaatccggggt
gtattggggctggacaagaaatacacccaaacagaggtggagaacattatcgcgaattcc
gaagttcccctttccaaggtctcgcgggtccaatttgtgagaaaccgatactggatcctc
aaatacctggaaaccaagttggggaagaccgagccgggcatgattctggagcgcagaaag
gaccggtttgtggccttgcttaccgattgtctggtggagtgcacgctgcccgtcgcctcg
gatcccagcctggcgccgcaagatgccgttcagttgcggatcgtcaaggtggacccccgg
gagcaattccttgccgtggagttggcctga
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