Desulfatibacillum aliphaticivorans: Dalk_3785
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Entry
Dalk_3785 CDS
T00813
Name
(GenBank) ATP-dependent DNA helicase, RecQ family
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
dal
Desulfatibacillum aliphaticivorans
Pathway
dal03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dal00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Dalk_3785
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dal03019
]
Dalk_3785
03400 DNA repair and recombination proteins [BR:
dal03400
]
Dalk_3785
Enzymes [BR:
dal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Dalk_3785
Messenger RNA biogenesis [BR:
dal03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Dalk_3785
DNA repair and recombination proteins [BR:
dal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Dalk_3785
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
HEM4
Cys_Met_Meta_PP
Peripla_BP_4
Motif
Other DBs
NCBI-ProteinID:
ACL05472
UniProt:
B8FC54
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All DBs
Position
4777266..4779194
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AA seq
642 aa
AA seq
DB search
MEQDNPNALLAQFGFETFLKGQKEVVDLILAGKSACALFPTGAGKSLCYQLPALALPGLT
LVISPLLSLMKDQLDFCLEKGIPAARLDSSLSREEYSQVLDDAKSGKLKILMISVERFRN
ERFRIHLKKWKLSLLVVDEAHCISEWGHNFRPEYLKIPTYARVFNAPQVLLLTATAVPEV
QEDMRGKFGIPPENFVNTGFYRENLYLRVAPMPDSQKDQALKDIIANKPQAPTIVYATRQ
KTAEQVAEFLKKQGFAAKAYHAGMRNEEREAVQNEFMEGKVHVVAATIAFGMGIDKSDIR
RVIHYDLPKSLEGYSQEIGRAGRDGRPALCQALPNLDGMNILENYVYGDTPEKEGIAAVV
DQIHNNESNEWEVRLFALSSQTDIRALPLKTLLVYLEMMGIIEPIKTYFDEISFKPLKNL
NNLPENFQGERREFVENILANSQAAKIWRRPDMGAIMKQTHSPRERILVALEYFEGKGWM
ELRSSRAVDVYRLIKKDFDKDALCQELHSLFEKKEKAEVSRVHALVDFFQERRCLPQSLS
GHFGDQSAPKCGHCTVCETGPAKLKSYKKLAPLSGFNYNDLTAAFSQALQGKATAIKTAR
FLCGLPSPLLTAIKAKGLAGFSALEDYPYAEVLAWIREHGAT
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atggaacaggataaccccaacgccctattagctcagttcggctttgaaacttttttaaaa
ggtcaaaaagaggtcgttgaccttattcttgcaggaaagtcagcctgcgcattgtttcct
acgggcgcaggcaaatccttgtgctaccaacttcccgccctggctttgcccggcctgacc
ctggtcatttcccccctcctctccctcatgaaggatcaattagacttttgcctggaaaaa
ggcattcctgctgccaggctggactcatccctttcccgggaggaatacagccaggtgctg
gatgacgccaaatcagggaagctgaagatcctcatgatctccgtggagcgttttcggaac
gagagattccgcattcatcttaaaaaatggaagctctccctgttggttgtggacgaggcc
cactgcatttccgaatgggggcataacttccggccggagtatttgaagattccgacctac
gccagggtgttcaacgcgccgcaggtcctgttgcttacggccacggccgtcccggaagtg
caagaggatatgagggggaagttcggcatacctcctgagaacttcgttaatacgggattt
tatcgggaaaacctttatctacgggtggcgcccatgcctgattcccaaaaggatcaggct
ttaaaggatatcatagccaacaagccacaagcccccaccatagtgtacgccaccaggcaa
aaaaccgccgaacaggttgctgaatttttaaaaaagcaaggatttgcggccaaagcctac
catgccggcatgcgcaacgaggaacgcgaagccgttcaaaacgaattcatggagggcaag
gtccatgtagtggcggccaccatcgcctttggcatgggcatcgacaagtcggacattcgc
cgggtgattcactatgatttgcctaaatcattggaagggtacagccaggaaatcggccgg
gcgggcagggacggcaggccggccttgtgccaggccttgcccaacctggacggtatgaac
atcctggaaaactatgtgtacggcgacaccccggaaaaggaaggcattgcagcggtggtg
gatcaaatccataacaacgaaagcaatgagtgggaggtgcggctgtttgcgttgtccagt
caaacggatatccgcgctctgcccttgaaaacccttctggtttatctggagatgatgggg
atcattgaaccgataaaaacctactttgacgaaattagcttcaagccgttgaaaaacctc
aacaacctgccggaaaattttcagggcgagcgccgggagtttgtggaaaatatcctggcc
aattctcaagctgcgaaaatttggcggcgtcctgacatgggcgccattatgaaacagact
cactctccccgggagcggattctggtcgcgttagaatactttgaaggcaagggatggatg
gaacttaggagttccagggcggtggacgtctatcggctcattaagaaggactttgacaaa
gacgctctttgccaggagttgcacagcctgtttgaaaaaaaggaaaaggcggaagtgtcc
agggtgcatgccctggtggattttttccaggagcgccgatgccttcctcaaagcctttcc
gggcattttggggatcaaagcgccccgaagtgcggccattgcacggtttgcgaaacaggg
cctgccaagctgaagtcttataaaaaactcgccccgctctccggattcaactacaatgat
cttacggccgccttttcccaggccctgcaagggaaagccacagccattaaaaccgcccga
ttcttatgcgggctgccgtctccattattaaccgccataaaagccaaaggacttgcagga
tttagcgctttggaggattatccctatgcggaggtattggcctggattcgggagcacgga
gcaacctga
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