KEGG   Desulfatibacillum aliphaticivorans: Dalk_5215
Entry
Dalk_5215         CDS       T00813                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
dal  Desulfatibacillum aliphaticivorans
Pathway
dal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Dalk_5215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:dal03021]
    Dalk_5215
   03019 Messenger RNA biogenesis [BR:dal03019]
    Dalk_5215
Transcription machinery [BR:dal03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Dalk_5215
Messenger RNA biogenesis [BR:dal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Dalk_5215
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N ATPase_2 NACHT OB_RNB AAA_22 S1CSD-TOTE-2 AAA Spore_III_AA AAA_14
Other DBs
NCBI-ProteinID: ACL06885
UniProt: B8FEA4
LinkDB
Position
complement(6434237..6435505)
AA seq 422 aa
MDQEFAPMNLGALKDKKINELAAIGKSFNIEGAAGMRKQELIFAILRAQTEKNGMIHGEG
TLEILPDGFGFLRAPDYNYLPGPDDIYVSPSQIRRFNLRTGDTVAGQIRQPKESERYFAL
LKVESVNFEDPEVSRDKILFDNLTPLYPNDRMNMEREADNYSVRIINLLTPIGFGQRGLI
VSPPRSGKTMLLQNIANSINANHKDVFLIVLLIDERPEEVTDMQRSVKAEVISSTFDEPA
QRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPPSGKILSGGVDSNALHR
PKRFFGAARNVEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNLELQLDRRLADKRTFP
AIDINRSGTRKEELLLPPETLNRVWILRKLLSSLNPIDSMEFLLEKMKGTSDNEDFLQSM
NG
NT seq 1269 nt   +upstreamnt  +downstreamnt
atggatcaagaattcgccccaatgaaccttggagcactaaaagacaagaaaatcaatgag
ctcgcggctattggcaagtccttcaatatcgaaggcgcggccggcatgcgcaagcaggag
cttattttcgccatcctccgggcccagaccgaaaagaacggcatgatccacggagaaggc
accttggaaatccttcccgacgggttcgggttcctgagagccccggactacaactatctg
cccggaccggacgacatctacgtgtctccctctcagatccgccgcttcaacctgcgcacg
ggcgacaccgtggccggccagatccgccagcccaaggagtcggagcgctacttcgccctg
ttgaaggtggagtccgtcaactttgaagaccccgaggtctctcgcgacaagattctcttc
gacaacctgacgcccttgtatcccaacgaccgcatgaacatggagcgggaggcggacaat
tactcggtcaggatcatcaacctgcttacgcccatcggattcggccagcgcggactcatc
gtgtctccgcccagaagcggcaagaccatgcttctgcagaatatcgccaattccatcaac
gccaaccacaaggacgtcttcctcatcgtgctgctcatcgacgaacggcccgaggaagtg
acggacatgcagcgttcggtcaaggccgaggtcatctcctccacctttgacgaaccggcc
cagcgccacgtgcaggtggccgaaatggtcattgaaaaggccaaacgcctggttgagcat
aaaaaggacgtggtcatcctgctggacagcatcacccgtctggccagggcctacaatacg
gtagtgccccccagcggaaagattctttccggcggcgtggactccaacgctttgcatcgt
cccaagcgctttttcggcgcggccagaaacgtggaggaaggcggcagcctgaccatcatc
gccacggccctcatcgacaccggaagccgcatggacgaagtcattttcgaagaattcaag
ggcacgggcaacttggaactgcaactggatcgccgtctggcggacaagcggaccttcccg
gccatcgacatcaaccgttccggcacgcgcaaggaagagctcctgctgcctccggaaacc
ctcaaccgcgtgtggatactcagaaaactgctttcttccctcaatccgatcgattccatg
gaatttttacttgaaaaaatgaaaggaacgagcgataatgaggatttcttgcagtcgatg
aacggctga

DBGET integrated database retrieval system