Dermacentor albipictus (winter tick): 135896364
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Entry
135896364 CDS
T11267
Name
(RefSeq) polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
dalb Dermacentor albipictus (winter tick)
Pathway
dalb03015
mRNA surveillance pathway
dalb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dalb00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
135896364
09123 Folding, sorting and degradation
03018 RNA degradation
135896364
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dalb03019
]
135896364
03041 Spliceosome [BR:
dalb03041
]
135896364
Messenger RNA biogenesis [BR:
dalb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135896364
mRNA cycle factors
Stress granule specific factors
135896364
Spliceosome [BR:
dalb03041
]
Complex C
Other components
Complex C specific factors
135896364
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_7
RRM_5
RBD_RDR6
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
135896364
NCBI-ProteinID:
XP_065280818
LinkDB
All DBs
Position
7:19913900..19920126
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AA seq
684 aa
AA seq
DB search
MNPSGPNYPMASLYVGDLHPDVTEAMLFEKFSTAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDPIKSKPIRIMWSQRDPSLRKSGVGNVFIKNLDKTIDNKAMYDTFS
AFGNILSCRVATDEEASSKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKER
EKMLGDKARCFTNVYIKNFGDELDDEKLMVIFEKFGKITSAKVMTDENGKNRGFGFVSFE
DPECAERAVDELNGKEMGGRVLYVGRAQKKAERQSELKRHFEQLKQERLNRYQGVNLYVK
NLDDALDDERLRKEFAPFGNITSAKVMTDGNGRSKGFGFVCFSSPEEATKAVTEMNGRIV
VSKPLYVALAQRKEDRKAHLASQYMHRIAGMRMQMGQMFPPGGAGAAGYFVPTMPHQTPQ
RSYFPATLGPAQMRATPRWTGQQQQLRGPGGPQAGAGGPQGAQPQGGFPTSLPYQRQPRP
SLATQPQRGALGSARPITGGQQAPPPQQAPPQQAPSAPRVVGPRPAGLAPQTAGGPRPTY
KYTQSMRNPPQIQPVSAPVTAQFQVTAQQQQQQQVAAAAAAAQQVSQTQQAAVHIQGQEP
LTASMLAEATPHDQKQMLGERLFPLIHRMYPDLAGKITGMLLEIDNSELLHMLEHHESLK
AKVEEAVAVLHAHQAKENVAMKKE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagtggcccaaactacccgatggcttctctctacgttggcgacttgcacccg
gatgttacagaggcgatgctgttcgagaaattttccacagcgggtcccgtgctttcgatt
agggtctgcagagacatgatcactcgacgatctctcggctacgcatatgtcaacttccag
cagcccgctgatgcggagcgcgccctggacacaatgaacttcgaccctatcaaaagcaag
ccgatccgtatcatgtggtcacagcgagacccatcgctgcggaagtctggggttggaaat
gtgttcataaagaacctggataagaccattgacaacaaggccatgtacgacacattctct
gcgtttgggaacatcctgtcttgtcgagtggccacagacgaagaggcttcctcaaaggga
tatggttttgtccatttcgagaccgaagaagctgccaacaaggctattagcaaagttaac
ggcatgctgctcaacaacaagaaggtctatgtgggcaagttcatcccccgcaaggaacgc
gagaagatgcttggcgacaaggctcgatgcttcaccaatgtgtacataaagaattttggt
gatgagcttgacgatgagaagctcatggtcatttttgagaagtttggcaagatcaccagt
gccaaggtgatgacagatgagaacggcaaaaaccggggctttggctttgtctcgtttgag
gaccccgagtgcgctgaacgcgctgtggatgagcttaatggcaaggaaatgggcggtcgg
gtgctgtacgttgggcgtgcccaaaagaaggctgagcgccagtcagagctaaagcgtcac
tttgaacagctgaagcaggagcgtctgaatcgctaccagggtgtcaacctgtatgtcaag
aacctggacgatgccctggatgacgagcgcctccggaaggagtttgctccttttggcaac
attacgagtgccaaggttatgacagatggcaacggacgctccaagggctttggatttgtc
tgcttcagctcgccagaagaggcaacaaaggctgtgacagaaatgaatggccgtattgtg
gtctccaaaccactttacgttgctctggcccagcgcaaggaagaccgcaaggcacatctt
gcctcgcagtacatgcaccgcattgcaggcatgcgcatgcaaatgggacagatgttccca
ccaggtggtgcaggtgcagcaggctactttgtgcccaccatgccccatcaaactccccag
cgcagctacttcccagccactctaggcccagcccagatgcgtgctacacctcgctggaca
ggccagcagcagcagctgcgtggacctgggggaccccaggcgggtgctggtggaccacag
ggggcccaacctcagggaggcttccccacttcactgccctaccagcggcagccacgtcct
tccctggcaacacaaccacagcggggagccctcggcagcgcacgaccaatcacgggtggg
cagcaggctccaccaccacagcaggctccaccgcagcaggccccatctgcgcctcgggtg
gttggccctcgccctgcgggtcttgcccctcaaactgctggaggtccacgcccaacttac
aagtacacccagtccatgcgcaacccaccccagatccagcctgtctcggcacccgtgact
gctcaattccaggtgactgctcagcagcagcagcaacagcaggtggccgcggctgcagcg
gcagcccagcaggtgtctcagacgcagcaggcagcagtgcacatccaaggccaggaaccc
ctgaccgcttccatgctggctgaggccacaccacacgaccagaagcagatgctgggcgag
cgcctgttcccactgatccaccgcatgtatccggacctcgctggcaagatcaccggcatg
ctactcgagattgacaattcagagctgcttcacatgctcgagcaccacgagtcgctcaag
gccaaggtggaagaagccgttgcagtgctgcatgctcaccaggccaaggagaacgtggcc
atgaagaaagagtag
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