Dermacentor albipictus (winter tick): 135898552
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Entry
135898552 CDS
T11267
Symbol
Upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
dalb Dermacentor albipictus (winter tick)
Pathway
dalb03013
Nucleocytoplasmic transport
dalb03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dalb00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
135898552 (Upf1)
03015 mRNA surveillance pathway
135898552 (Upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dalb03019
]
135898552 (Upf1)
Enzymes [BR:
dalb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
135898552 (Upf1)
5.6.2.5 RNA 5'-3' helicase
135898552 (Upf1)
Messenger RNA biogenesis [BR:
dalb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
135898552 (Upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
135898552 (Upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
UvrD-helicase
AAA_16
ATPase
DEAD
Helicase_RecD
nSTAND3
SRP54
AAA_22
AAA
Motif
Other DBs
NCBI-GeneID:
135898552
NCBI-ProteinID:
XP_065283640
LinkDB
All DBs
Position
2:complement(195703221..195740697)
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AA seq
1124 aa
AA seq
DB search
MSMSVDAYGPSSQTLTFLDTEEASDLLGADTQGSEFDFTDFTLPSQTQASQADGGQTQGS
RGGQLPGEVRSNGLEVAAAGQALGELTFEEDEEDQYYAKDLPEHACKYCGIHDPGCVVQC
NVCKRWFCNGRGNTSGSHMVNHLVRAKHKEVTLHRDGPLGETVLECYSCACRNVFVLGFI
PAKADSVVVLLCRHPCAAQSSLKDMNWDPDQWKPLIHDRCFLPWLVRAPLERDQLRARQV
TAQQISRLEELWKDNVDASFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKMEADYD
KKLKESQTQDNIEVRWDIGLNKKMIAYFTVAKSDTDMRLMHGDELRLRYLGELHKPWSGV
GHVIKIPDNYSEEVGIEMKTNLGVPSECTSNFVVDFVWKSTSFDRMQAALRKFAVDECSV
SAYIYHRLLGHEVEEVVMRCPLPKHFSAPQLPELNRSQVYAVKHALQRPLSLIQGPPGTG
KTVTSATVVYHLAKQSTGPVLVCAPSNIAVDQLTEKVHQTGLRVVRLCAKSREALNSPVS
FLALHNQIRSMDGHSELHKLQQLKDETGELSSADEKRYRMLKKACERELLEAADVICCTC
VGAGDPRLARFKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAR
AGLSQSLFERLVVLGIRPLRLEVQYRMHPQLAQFPSNFFYEGSLQNGVFADERRMRGLDF
PWPQPERPMLFYACQGQEEMAGSGTSYLNRTEAALVEKICTRFLRSGVKPQQVGVITPYE
GQRAYLVQHMQFQGALHAKLYQEIEVASVDAFQGREKDLIVMSCVRSNEHQGIGFLNDPR
RLNVALTRARYGLIIVGNPKVLSKQPLWNHLLSFYKENRVLVEGPLNNLKESLIQFSKPR
KLVNTVNPGGHFMSTTVFDAREAMVPGSVYDRSSQLNGGPDWRNTGRGAWAPLKENFPET
AFGRHHDPLAYIGPAERAAANPGLPVPVGLFMNMAHVPPRFYNQHQQALQARRGAAGPAK
GPPPRRTARQQQQPPPGRRAPPGSQFNSQASQGVLSQPGGSGPLSQPGVGALSQLSQESC
FLGEELRSQAEGMLSQDSSYQGDRHCFGQPPSSSTAHFAAQQPY
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgagtgtcgacgcgtacggacccagctcgcagacgcttacattcctcgacacg
gaggaagccagcgacttgctgggagccgacacgcagggatcagagttcgatttcaccgac
tttacgttgccgtctcaaactcaagcgtctcaggcagatggcggacagacacagggaagc
cgtggaggccagcttcctggggaggtgcgcagcaacggcttggaggtggccgcagctgga
caggccctgggcgagctcacctttgaggaggatgaagaagaccagtactacgccaaggat
ctacccgagcatgcctgcaagtactgcggcattcatgatcctgggtgcgttgttcagtgc
aacgtgtgcaagcgctggttctgcaatggtcgaggcaacacgtctggcagccacatggtg
aaccacctggtgcgtgccaagcacaaggaggtgaccctccaccgagatggcccacttggc
gagacagtgcttgagtgctattcgtgtgcctgccgcaacgttttcgtccttggcttcatt
ccggccaaggccgactcggtggtggtattgctttgccggcacccatgtgccgcccagtcc
tccctcaaggacatgaactgggacccggaccagtggaagccactcatccacgatcgctgc
ttcttgccatggctagtgcgtgcacctctcgagagagaccagctgcgtgcccgccaggtg
actgcacagcagatctcaaggcttgaagagctctggaaggacaatgtggatgccagcttt
caggatctggagaaacctggtgtggacgaggaaccccagcaggtgctgctgaggtatgag
gatggctaccagtaccagaacatctttggccctttggtcaaaatggaagcagactatgac
aagaagctcaaggagtcgcagacacaggacaacatagaggtacgctgggacattgggctc
aacaaaaagatgattgcctatttcacagtcgccaagtctgatacagatatgcgactgatg
catggtgatgagctacgactgcgctaccttggagaactgcacaagccatggtctggtgtg
ggccatgtcatcaaaatccctgacaactacagtgaggaagtaggcattgaaatgaagaca
aacttgggcgtcccatctgagtgcacctccaactttgtggttgactttgtgtggaagtcc
acgtcctttgacaggatgcaggccgcactccgcaagtttgccgtcgacgagtgctcggta
tcggcatacatctaccatcggctgctaggccacgaggtggaggaagtggtgatgcgctgc
ccattgcccaagcacttttcagcgcctcagctgcctgagctgaaccgctcacaggtgtat
gcagtgaagcacgcactgcagcggccactgtcgctcatccagggaccaccaggcacgggc
aagacggtgacatcggcaacagttgtgtaccacctggccaaacagagcacagggcctgtc
ctagtgtgtgcacccagcaacattgctgtggaccagctgacggagaaagtacaccaaacg
ggtctgcgggtggtgcgtttgtgtgccaagagtagagaggccctgaactcacccgtgtcc
ttcttggcactgcacaaccagatccgcagcatggatggccactctgagctgcacaagctg
cagcagctgaaggacgagacgggcgagctgtcgtcagctgacgagaagcgctaccgcatg
ctcaaaaaagcctgcgagcgtgagctcttagaggctgccgatgtcatctgctgcacgtgt
gttggggcaggagaccctcggctagcgcgcttcaagttccactctatcctcatcgacgag
agcatgcaggccactgagccagagtgcatggtgcccgttgtacttggggccaaacagctg
atcctggtaggtgaccactgccagctgggccctgtggtgatgtgcaagaaggcagcacgg
gctgggctgtcgcagtcgctctttgagcggcttgtggtactcggcattcggcccttgcgc
ctggaggtgcagtaccgcatgcaccctcagctggcccaatttccatcaaacttcttctac
gagggctccctgcagaacggcgtgtttgccgacgagcgccgcatgcgtggtctggatttc
ccgtggccacagccagagcggccaatgctcttctatgcctgtcagggccaagaggagatg
gcgggcagtggcacctcgtacctgaaccgcaccgaggccgcactcgtggagaagatctgc
acacgcttcctgcgcagcggtgtcaagcctcagcaggtcggcgtcatcacgccttatgaa
ggtcaacgtgcctacctggtgcagcacatgcagtttcagggggctctgcatgccaagctg
taccaggaaattgaggtggccagcgtggacgccttccagggccgagagaaggacctgatc
gtgatgtcctgtgtgcggtccaatgagcaccagggcattggatttctcaacgacccccgt
cgtctgaatgtggcactgacacgagctcgctatggtcttattattgtggggaatcccaag
gtgctgtcaaagcagcctctgtggaaccacttgctgagcttctacaaggagaatagagtg
ctggtcgaaggtcccctaaataacctcaaggaaagtctaatccagttcagtaagccacgc
aagctggtcaacacggtgaacccaggtggccacttcatgagcaccactgtgtttgatgct
cgagaggccatggtgcctggtagtgtgtatgaccgctcatcccagctgaatggtgggcca
gactggcggaacactggccgtggagcctgggcacccctcaaggagaacttccctgagaca
gcttttggccggcaccacgacccactggcgtacattggccctgcagagcgggctgcagcc
aatcctggccttcctgtgcctgtggggctgttcatgaacatggcacatgttccaccgcgc
ttctacaatcagcaccagcaagcactgcaggcacggcgaggggctgctggcccagcaaag
ggccccccaccccgccgcacagcccgccagcagcaacagcctccaccaggacggcgcgca
ccaccaggctcgcaattcaacagtcaagctagccagggagtactgtcccagccgggtggc
agtgggccactgtcgcagcctggagtgggcgccctgtcgcagctgtcacaagagagctgc
ttcctgggggaggagcttcgctcgcaggccgagggcatgctctcccaggactcatcttac
cagggggacaggcactgttttggacagcctccctcttcctccacagcccacttcgcagca
cagcagccctactga
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integrated database retrieval system
