Dermacentor albipictus (winter tick): 135903959
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Entry
135903959 CDS
T11267
Symbol
tst
Name
(RefSeq) superkiller complex protein 2 isoform X1
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
dalb Dermacentor albipictus (winter tick)
Pathway
dalb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dalb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
135903959 (tst)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dalb03019
]
135903959 (tst)
Enzymes [BR:
dalb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
135903959 (tst)
Messenger RNA biogenesis [BR:
dalb03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
135903959 (tst)
mRNA degradation factors
3'-5' decay
Ski complex
135903959 (tst)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
Ski2_N
ResIII
MTR4-like_stalk
DUF3516
ATPase_2
Motif
Other DBs
NCBI-GeneID:
135903959
NCBI-ProteinID:
XP_065290542
LinkDB
All DBs
Position
1:73963340..74085752
Genome browser
AA seq
1142 aa
AA seq
DB search
MESLPQHLRFKELWGGKDVDIEPGQCSNLFDSPFPFGIPPVIPDVEDQANEILDDIWEGC
TTRCPHGSQRCFLSPPNINSLFSCDVSMAPSELKVLRNLTTGTLEGYEEVFTEEAALEDN
EQVIDLTKDLLTVPPGFEEGMTFGSEQPSSEDKFSVRHVLNLADVLSSGEPQVTEESSLE
VKQISDSLLSQTLDDAGLLENLPLEPVANVLNISNVTNDRNVCLEWAEQVDISKPMLDFH
EKVADPAFSWPFELDTFQKKAIAHLENRDSVFVAAHTSAGKTVVAEYAIALSRRHMTRTI
YTSPIKALSNEKYRDFKETFTDIGLITGDVQINKEASCLIMTTEILRSMLYNQSNVVADL
EWVIFDECHYINDPDRGVVWEEVLIMLPSHVGLVLLSATVPNALSLANWIGRIKERKLYV
ICTTKRPVPLEHHLYFNQETFLILDATNKFQTASYMKACARRKETMKATRTYDDKTRYQG
LIQHLRKADRLPAICFTLSRRRCDENAQLLQALDLTTAEEKGAVRRFLQNNVVSRLSRAD
QRLPQLRSLRGLLEAGFGVHHSGVLPILKEAVEMLFQRGLVKVLFATETFAMGVNMPART
VVFDSIRKHDGISNRDLLPAEYIQMAGRAGRRGKDETGTVLLLCKGDVPESSQLQAMMLG
RPTELQSRFRVTYSMILNLKAQANKRVEDMMRDSFRENSSQSQSPSLAERCASLENELNS
LAPVECTSCQELPFELLEEEAAARVAAWEHVLTQPQAARCLSPGRLLLVCCPEGRNLLGT
LASLAPREKRLTLWTLADSQPQSSGKTSLPWPLSKKIAIPDAALSVQEMTVPFSSILCIY
AKSVKVDPKRMMQPQCRSVLGQELLELVEAHPGGLPIINVVKELRLSAMETVELVKHSQQ
LEEKLLQSQCLSCPLFESHFEQERRRRRLSEEVRKLQHQLSEESLASMPDYRSHVLALEK
LGYVEPSGTLTLKGRVARALSSHEVMLTELLLQESLLTLGAPEVAGLFSCFVYEQRSNAE
VVIPLSMKAAVEKFVEVAHKIGRVQRESGFDEPAEQFVEQFSFGLCNVVYHWARGMHFAH
IMELTEVQEGIIVRCIQRLDELLKDVKTAAGIVGNPELRTKMEEASRLIRRDIVFAASLY
LQ
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggaaagtctaccacaacatttgcgcttcaaggagctgtggggtggaaaggatgttgat
attgaacctggacagtgttccaatctctttgattcaccatttccatttggcattccacca
gtcatacctgatgttgaggatcaggctaatgaaattttggatgatatttgggaaggctgt
accacacgttgcccacatggttctcaaaggtgctttttgtcccctccaaacataaactct
ttgttttcgtgtgatgtttcaatggccccatcagagctcaaggtcctaagaaatcttact
acaggaacacttgaaggatatgaagaggtgtttacagaagaagctgcgctggaagataat
gaacaagtgatagatcttaccaaagacttgctgacagttccacctggatttgaagaaggc
atgacttttggcagtgagcaaccctcaagtgaagacaagttctctgtgcgccatgtactc
aatttggccgatgtgctgtcctctggagagccacaagtcacggaagagtccagcttagaa
gtcaagcaaataagtgatagcctgctaagccagaccctggatgatgctggactgttggag
aaccttccattggagcctgtggccaacgttctgaacatcagcaatgttacgaatgaccgc
aatgtttgtcttgagtgggctgaacaagtggacatttccaagcccatgttggatttccat
gaaaaagtggccgaccctgccttcagttggccgtttgaactggacacctttcagaagaag
gccattgcacacttagaaaacagggattctgtgtttgtggctgctcacacttctgcaggc
aagactgtagttgcagaatatgccattgcactctctcggcgtcacatgacaaggacaatt
tacacatcacctatcaaggctttgtccaatgaaaagtaccgtgacttcaaggaaaccttt
acagacattgggcttatcacaggcgatgtacagatcaacaaggaggcatcctgtctcatc
atgacaacagaaattctcaggtctatgctttacaaccagtcaaatgtggtggctgatctg
gaatgggtcatatttgatgaatgccactacattaatgatcctgatcgtggtgttgtgtgg
gaggaagtcctcatcatgctgccaagccatgttggacttgtcctgcttagtgccactgta
ccaaacgcattgagccttgccaattggatcgggcgtattaaggagcgcaagctgtacgtc
atttgtaccacgaaacgtcccgtgcctctggaacatcacctgtatttcaatcaggaaacg
tttcttattctggatgctactaacaagttccagactgccagctacatgaaggcctgtgca
agacggaaagaaaccatgaaggcgactcgaacatatgatgacaagacccggtaccagggt
ctaattcagcaccttcgcaaggcagatcggctaccagcaatttgcttcactctgtcacgt
cgtcgctgtgatgaaaatgcccagttattgcaagcacttgacttgactaccgccgaggag
aagggggctgtacggcgcttcctgcagaacaacgtggtgtcccgattgagccgtgctgac
caacggctaccacagctacgctcattgcgaggcctcctggaggctggttttggagttcac
catagcggtgtgctgcccattctcaaggaggccgttgagatgctcttccagcgtggcctt
gtgaaggtgctgtttgctacggagacatttgctatgggtgtcaacatgcctgctaggaca
gttgtttttgacagcatccgaaagcacgatggcattagcaaccgggacctgctgcctgct
gaatacatccaaatggctggaagggctggtcggcgtggcaaggatgagacaggcacagta
ttgttattgtgcaaaggagatgtcccagagtcatcacagttgcaagcgatgatgcttggt
cgaccaacagagttgcagtcacggttccgtgttacatactccatgatcctcaatctcaag
gcccaggccaacaagcgtgtcgaggacatgatgagggactcttttcgagagaactccagc
cagagtcaaagcccaagcttagctgaacgttgtgcatccttggagaatgagttgaactca
ctggctcctgttgagtgcacgtcgtgtcaagagctgccatttgagcttctggaagaagaa
gctgctgcacgagttgctgcctgggagcatgtgctgacacaacctcaagctgctcgttgc
ctgtcaccggggcgcttgctactcgtgtgctgcccggagggacgcaaccttcttgggact
ctggcctccctggcgcctcgggaaaagaggctcacactatggacattggcagattcacag
ccccagtcaagtggcaagacgtcacttccttggccactgtccaagaagattgctatcccg
gatgcagctctcagtgtacaggagatgacagtcccgttcagcagcatcctctgcatttat
gccaaaagcgtcaaggttgaccccaaacgcatgatgcagcctcagtgcagaagcgtttta
ggccaggagctgcttgaactggtggaggcgcaccctggaggtctgccaatcatcaatgta
gtcaaagagcttcgcctttcagctatggaaactgtggaactggtgaaacatagccagcag
cttgaagagaagctgcttcagagccagtgccttagttgcccactctttgagagccatttc
gagcaggaacgtcggcgacggcgactatcggaggaggtgcgaaagctgcagcaccagcta
tcagaggaaagccttgcttccatgcctgactaccgaagccatgttctggctctggagaag
ctaggctatgtggagccaagtggtacactcacactcaagggccgtgtggcgcgtgctctc
tccagccatgaagtaatgctcacagagctgctgctgcaggaatcactgctcaccctcggc
gcacctgaggtggctggcctgttctcttgctttgtctatgagcagcgctccaatgccgag
gtcgtcatcccactctctatgaaggcagcggtggaaaaatttgtggaggttgctcacaag
attggtcgtgtacagcgggagagtggctttgatgaacctgcggaacaatttgtagagcag
ttcagctttggtctctgcaatgtggtttaccactgggctagaggcatgcactttgcacac
atcatggagctgacagaagttcaagaaggtattattgtgaggtgcattcaacgcctggat
gagcttctcaaggatgtcaagactgctgcaggtattgttggcaatcctgaacttcgcacc
aagatggaggaagcatcacgcttgattcggcgggacattgtttttgcagccagcctctac
ttgcagtga
DBGET
integrated database retrieval system
