Dermacentor albipictus (winter tick): 139048022
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Entry
139048022 CDS
T11267
Symbol
Rat1
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
dalb Dermacentor albipictus (winter tick)
Pathway
dalb03008
Ribosome biogenesis in eukaryotes
dalb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dalb00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
139048022 (Rat1)
09123 Folding, sorting and degradation
03018 RNA degradation
139048022 (Rat1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dalb03021
]
139048022 (Rat1)
03019 Messenger RNA biogenesis [BR:
dalb03019
]
139048022 (Rat1)
03009 Ribosome biogenesis [BR:
dalb03009
]
139048022 (Rat1)
03016 Transfer RNA biogenesis [BR:
dalb03016
]
139048022 (Rat1)
Transcription machinery [BR:
dalb03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139048022 (Rat1)
Messenger RNA biogenesis [BR:
dalb03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
139048022 (Rat1)
Ribosome biogenesis [BR:
dalb03009
]
Eukaryotic type
Pre-60S particles
RNases
139048022 (Rat1)
Transfer RNA biogenesis [BR:
dalb03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
139048022 (Rat1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC_4
Motif
Other DBs
NCBI-GeneID:
139048022
NCBI-ProteinID:
XP_070378465
LinkDB
All DBs
Position
7:complement(69495990..69615215)
Genome browser
AA seq
1002 aa
AA seq
DB search
MGVPAFFRWLSKKYPSIVAHCVEEKPQVVDGVRIPVDTTKPNPNDVEFDNLYLDMNGIIH
PCCHPENKPAPKNEDEMMVAIFEYIDRIFSVVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKESAEKVEEMSRIRAELRDRGVPLPPEKDKSEHFDSNCITPGTPFMDRLAKCLHYYIH
DRLNNDPGWQNIEVILSDANVPGEGEHKIMDFIRRQRANPKHDPNTHHCLCGADADLIML
GLATHEPNFTIIREEFKPNQPRPCDLCGQLGHEMKDCQGLAKEKTGEFDELEKPMGAETE
FIFLRLNILHEYLERELRMDNLPFEFDIERAIDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNLYKKAVHRTGGYLTENGYVAMNRVQLIMSELGEAEDEIFKRRQQNELNFKRRMKE
KKKRMKMEAESEARPAWTPRGQFAPVAVGQHVSPVQNAKQEAHNMRREGMEHRRNLSDGG
GSSANGRLESMLRPAHSDSDVRGEKRKHEGDSSEEEEEPHDEVRLWEDGWRERYYVSKFD
IGPDNIAFRHDVASAYVEGLCWVLRYYYQGCASWKWFFPYHYAPFASDFINVGDLKIEFE
RGTQPFKPMEQLMSVFPAASKQHLPTPWADLMDDPDSPIIDFYPTDFKIDLNGKKYAWQG
VALLPFVDEKRLLETVQTVYPHLTEDEKKRNTRGDDVFYVRKGHRGYSYLLGLYEACKDY
NMEFDLEPKYFGGVGGKILLSHIAVGPGDDVRSVIPGLDDIPGNMVVCVRFRDPKYADDF
VFPAKRLPGATEPQRVLKPGDLSQEESRNWRPQIGMAPRRHIASLGNSGHRMIGHAVASM
GPYSQVAPPAYHNRNDRQSWGQGASGRGGYRQDSSPGSRHLWSGGGDSYQRQHSGGYQGG
GGGGRGGWSPQQGRNQGGGGGPARTGPGTGWGQSSTSPHIPRSLPAPPRDQQQHGYGGQQ
QHGQRHHPYGGGGGRQQMAPPSSRQQGGYQQQQRYHQRHPTW
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccagccttcttcagatggctgagcaaaaagtatccatccatagttgcccac
tgcgttgaagaaaagccgcaggttgtcgatggcgtcaggatcccggtggacacaacaaag
ccgaatccaaatgatgtagaattcgacaacttgtacttggacatgaatggaattatacat
ccctgttgtcatccagaaaacaagccagctccaaaaaatgaagatgagatgatggtggcc
atctttgaatacattgaccgcatcttcagcgtggttcggccccggcgactgctctatatg
gccattgacggagtggctccacgagcaaagatgaaccagcagcgctctcggcgtttccgg
gcttccaaggagtctgccgagaaggtcgaggagatgagccgcatccgcgccgagctgcgt
gatcgtggagtgcccctgccaccagagaaggacaagagcgagcactttgacagcaactgc
atcacgccgggaacgccattcatggatcgcctggccaagtgcctccattactacatccac
gaccggctgaataatgacccaggctggcagaacattgaggtcatcctctccgatgccaat
gtgcctggcgagggggagcataagatcatggacttcattcgaagacagagagctaacccc
aagcatgacccaaacacacatcactgtctctgtggagcagacgctgacctcattatgttg
ggactagccacccacgaaccgaacttcaccatcatccgggaagagttcaaacccaatcag
cccagaccttgtgatctctgtggacagctcggacacgagatgaaggactgccaaggcctg
gccaaggaaaagacaggagagtttgatgagcttgaaaagcccatgggtgcggagacagag
ttcatctttcttcgtctgaacatcttgcacgagtaccttgagcgcgagctccgaatggac
aatctcccatttgagtttgacattgagagagctattgacgattgggtgttcatgtgcttc
tttgtgggcaacgactttcttccccaccttccgtccttagaaatcagggaaggtgcgatt
gacagactggtcaatttgtacaagaaagcggtgcacagaactgggggctacctaacagag
aatggctatgttgctatgaacagagtgcagctgattatgtcagagcttggggaagcagaa
gatgaaatcttcaagcgccgtcaacagaatgagctcaacttcaagcggcggatgaaggaa
aagaagaagaggatgaaaatggaggctgaatccgaggcgagacctgcatggacaccaagg
ggacagttcgccccagttgctgtcgggcagcatgtctcgccagtgcaaaatgccaagcag
gaagcccacaacatgcgccgggaaggaatggagcatcgccggaacctgagcgacggtgga
ggatccagcgctaacggtcgcctggagtccatgctcagacctgctcacagtgacagcgat
gtccggggcgagaagcgtaagcacgaaggggacagttcagaggaggaggaagagccccat
gatgaagtgcgactttgggaagatggctggagggaacgttactatgtttccaagtttgac
attgggcccgacaacatagcctttcgacatgatgtggcttccgcctatgttgaaggactc
tgctgggttcttcgctactactaccagggctgcgcatcctggaagtggttcttcccatat
cattacgcaccatttgcatctgacttcatcaacgtcggcgacctcaagatcgagtttgaa
cgaggaactcagcccttcaagcccatggaacagctgatgagtgtgttcccggcagccagc
aaacagcacctgcccacgccgtgggctgatctcatggatgatccggactcgcccatcatc
gacttctacccgaccgactttaagattgacctgaatggcaagaagtatgcctggcaaggc
gtggcactgctgccttttgtggatgagaagcgactgcttgagacggtgcagactgtctac
cctcaccttactgaagatgaaaagaagcgcaacacacgaggggacgacgtcttctacgtg
cgcaagggtcaccgcggctacagctacctcctgggcctctacgaagcttgcaaggactac
aacatggagtttgacctggagcccaagtactttggtggagttggcgggaaaattctgctg
agccacattgcagtcggacctggagatgatgtgcggtcagtcatcccaggcttggatgat
atccctggcaacatggtcgtttgcgtccgcttcagggatcccaagtacgccgacgacttt
gtgttcccagccaagcgccttcctggagcaacagaaccacagcgtgtgcttaaaccagga
gacctctctcaagaggaaagccgcaactggcgtccacaaattggcatggctccaaggcga
cacatagcatctctgggcaactctggacaccgcatgattgggcatgcagtggcgtctatg
ggcccttacagtcaagtagcgccacctgcatatcacaaccggaatgacaggcagtcttgg
ggacagggggcctctggtcgaggcggctacaggcaagactcttcgcctggcagcagacat
ctctggagtggcggtggagacagctaccagcggcagcactccggcgggtaccagggcggc
ggaggaggaggaagaggcggctggtccccgcagcagggcaggaaccagggcggaggggga
ggacccgcgcgtaccggacccggtaccggctggggacagtcatcgacttcgccgcacatt
ccacgctccctgcctgcaccaccccgggatcaacagcagcacggctacggcggtcagcag
cagcacggccagcggcatcacccgtacggtggtggcggtggccggcagcagatggcgcct
ccatcgtcgcgccagcaaggtggataccagcagcagcagcggtatcatcaacgtcacccc
acctggtag
DBGET
integrated database retrieval system
