Dermacentor albipictus (winter tick): 139060775
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Entry
139060775 CDS
T11267
Symbol
RtcB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dalb Dermacentor albipictus (winter tick)
Brite
KEGG Orthology (KO) [BR:
dalb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dalb03016
]
139060775 (RtcB)
Enzymes [BR:
dalb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
139060775 (RtcB)
Transfer RNA biogenesis [BR:
dalb03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
139060775 (RtcB)
Prokaryotic type
tRNA splicing ligases
139060775 (RtcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF6471
Motif
Other DBs
NCBI-GeneID:
139060775
NCBI-ProteinID:
XP_070395987
LinkDB
All DBs
Position
6:10928060..10959105
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AA seq
506 aa
AA seq
DB search
MGVRSYNEELGYLEKMTSVSWRIKKGFVPNMKVEGIFYVNNLLEKLMFEELRNSCRPGNV
GGFLPGVKQIGNVAALPGIVGHSIGLPDIHSGYGFAIGNMAAFDMDDPKAIVSPGGVGFD
INCGVRLLRTNLMEKDVLPIKEQLAQSMFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYAWAEDKEHCEEYGRMLNADPAKVSMKAKKRGLPQLGTLGAGNHYAEIQVVEEIYD
KNNAAKMGIERCGQVCVMIHSGSRGFGHQVATDALVAMEKAMKRDKIEVNDRQLACALIR
SAEGQDYLKSMAAAANFAWVNRSSMTFLSRQAFAKAYNTTPDDLDMHVIYDVSHNIAKVE
QHVVDGKMRTLLVHRKGSTRAFPPHHPLIPVDYQLSGQPVLIGGTMGTCSYVLTGTEQGM
GETFGTTCHGAGRALSRAKSRRNLDYQDVLDKLNEMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHEAGISRKCIKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccgcagctacaatgaggagctcggctacctcgaaaaaatgacatcagtctca
tggcgtatcaagaaagggtttgtgccaaatatgaaggttgagggaattttctacgtgaat
aacctcttggagaagcttatgttcgaagagctgcggaattcgtgccgcccaggaaacgtt
ggtggcttcctgccaggtgttaaacaaattggaaatgtggccgccttgcctggaattgtt
ggacattcaatagggcttcccgacatccattctggctatggctttgcgatcggcaacatg
gcagcatttgacatggatgatcccaaggcaattgtgtcacctggtggtgtgggcttcgac
atcaactgtggtgtccgtctgttgcgaaccaacttgatggagaaagatgttctgcccatc
aaggagcaactggcacagagtatgttcgaccacatccctgttggcgtgggctctaaagga
atcattcccatgaatgccagagacctcgaagaggccttggagatgggcatggattggtcc
ttgagagaaggctatgcctgggctgaagataaagaacactgcgaggagtacggacggatg
ctgaatgccgaccctgccaaggtttcaatgaaggcaaagaaacgaggcctgcctcagctg
ggaaccctgggtgccggcaatcactatgctgagatccaagtagtagaggagatttatgac
aagaacaatgcagccaagatgggaattgagcgttgtggtcaagtatgtgtcatgatccat
agtggcagcagagggtttggacaccaagtggctaccgatgcattggtggcaatggagaaa
gccatgaagcgggacaagatcgaggtcaatgaccggcagctggcctgcgctctcatccgc
tccgctgagggacaggactacctgaagtcgatggcagccgcagcaaactttgcctgggtc
aaccgcagcagcatgacttttctgagccgtcaggcatttgccaaagcatacaacacaacc
ccagatgacctggacatgcacgtgatctatgacgtgtcacacaacattgccaaggtggag
cagcatgtggtggatggcaagatgcgcaccttgctcgtgcaccgcaagggctcaacacga
gcctttcctcctcaccaccctctcattcccgtagactaccagctgagtggccaaccagtg
ctgattggtggcacgatggggacctgcagctacgtcctgacaggcactgagcagggcatg
ggcgagacattcggtactacttgtcatggcgccggccgtgcactttctcgggccaagtca
cggcgaaaccttgactaccaggatgtgctggacaagctgaatgagatgggcatctcgatt
cgcgtggcctcaccgaagctggtcatggaggaggctccagagtcgtacaagaatgtgaca
gatgtcgtaaacacgtgccatgaggctggcatcagccgcaagtgcatcaagctcaggcct
atcgccgtcatcaagggttga
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