Desulfosarcina alkanivorans: DSCA_00730
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Entry
DSCA_00730 CDS
T06544
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
dalk
Desulfosarcina alkanivorans
Pathway
dalk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCA_00730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dalk03019
]
DSCA_00730
03009 Ribosome biogenesis [BR:
dalk03009
]
DSCA_00730
Enzymes [BR:
dalk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DSCA_00730
Messenger RNA biogenesis [BR:
dalk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSCA_00730
Ribosome biogenesis [BR:
dalk03009
]
Prokaryotic type
rRNA processing factors
DSCA_00730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BBO66143
UniProt:
A0A5K7YC25
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All DBs
Position
complement(77358..78851)
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AA seq
497 aa
AA seq
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MTSKILINAVDPEEVRLAIVKDSRLEEFHIESAAREILHSSIYKGVITRIEPSLQAVFVD
VGVERHGFLQKQEIHSDYFQGPPANGKTIQNLVKRGQELMVQVTKDPIMKKGAMLTTFIS
LPGRYAVLMPGSDSRGISRKIDDETERKRLKEIVEKLNLPEGFGIIIRTAGQGCTKTMLT
KDVQYLLRLWKNITARAVKAPAPSALYKDRNLAVRSIRDHFTPDIKEILIDDEAVHQEVK
NFVQIIAPKQTNIVKLHKSDKPIFTRFQLEDQIATIFNNRVTLKSGGSVVLERTEALVAI
DVNSGKGTQKKNVEETALMTNLEAAPEIARQLRIRDLGGLIVVDFIDMREQKHRNQVEKA
LRAGMKQDRARVKIGKISKFGLLELSRQRLRPSIDFSSMETCSRCGGKGQVPSAESLGLS
FLRKLKLDTLKADVRHVAAQLPAPVASYLLNRKRKELSDLEDKRAIGITITSRVDLIPGQ
MEVVYDKKIKAVENSSA
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcaaaattctcatcaatgcagtggacccggaagaggtccgtctcgccattgtc
aaagacagccgcctggaagaatttcacatagaaagcgccgccagggaaatccttcacagc
agcatctacaaaggagtgatcacccgcattgaacccagccttcaggcggtgttcgtggac
gtgggcgtcgagcgtcacggcttccttcagaaacaggagatccacagcgactacttccag
ggcccgccggccaacggcaaaaccatccagaatctcgtcaaacgcggacaggaactgatg
gttcaggtgaccaaagaccccatcatgaaaaagggggccatgctcaccacattcatatcc
ctgcccggccgctatgcggtcctgatgccgggaagcgacagccgtggcatctcccgcaaa
atagacgatgagaccgaacgcaagcgcctcaaggagatcgttgagaagctgaatctgccc
gagggattcggcatcattatccgtaccgccggccagggatgcaccaagaccatgctgacc
aaggatgttcaatatctgctgcgcctgtggaaaaacatcaccgcgcgggccgtcaaggcg
cccgcaccatcggccctgtacaaggatcggaacctggccgtccgttccatccgcgatcat
ttcacgccggacatcaaggaaattctcatcgatgatgaagcggttcaccaggaggtgaaa
aacttcgttcaaatcattgcccccaaacagaccaacatcgtcaagctgcacaaatcggac
aagcccatttttacccggttccagctggaagaccagatcgccaccattttcaacaaccgg
gtgacactgaagtcaggcggatcggtcgtgctggaacgcaccgaggcactggtggccatc
gacgtcaactccggcaagggcacccagaaaaaaaacgtcgaagagaccgctttgatgacc
aatctggaagcggcgccggaaatcgcccgtcaactcaggatccgtgatctgggcgggctt
atcgtggtggatttcatcgatatgcgcgagcaaaagcaccgcaaccaggtggaaaaagcc
cttcgcgccggcatgaaacaggaccgggcccgggtaaaaatcggcaagatttccaagttc
ggcctgctggaactctcccgccagcgcctgcggccatccatagatttcagcagcatggaa
acctgttcacgctgcggcggcaaaggccaggtgccgtccgcggaatcactgggcctgagt
tttctgaggaagctgaagctggacacccttaaagcggatgtccggcacgttgccgcccaa
ttgccggcaccggtggcgtcttatctgctcaaccgaaaacgcaaggaactgagcgacctg
gaggacaaacgggcaatcggcatcaccatcacctcccgtgtggatttgattcccggccag
atggaggtcgtctacgacaaaaagatcaaagccgtggaaaattcatctgcatag
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