Desulfosarcina alkanivorans: DSCA_01580
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Entry
DSCA_01580 CDS
T06544
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
dalk
Desulfosarcina alkanivorans
Pathway
dalk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCA_01580 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dalk03019
]
DSCA_01580 (rhlB)
Enzymes [BR:
dalk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSCA_01580 (rhlB)
Messenger RNA biogenesis [BR:
dalk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSCA_01580 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
BBO66228
UniProt:
A0A5K7YAP5
LinkDB
All DBs
Position
177369..178733
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AA seq
454 aa
AA seq
DB search
MPPEPGKTRFHDLDLPDPVLHAVADVGFQYCTPIQAEIMPATLKGRDAFGRAQTGTGKTA
AFLITVLTRMLANPLKGKRPPGTPRVLIIAPTRELVLQIADEAHLLAAHCHFTIVSVFGG
MDYEKQRRQLHGRPVDIVVATPGRLLDFKRRRDLDLKRVEMLILDEADRMLDMGFIPDVR
QIVYSTPHKDKRQTLFFSATLTPDVTRLSASWTRDPVSVEIEPEQVAVDTVNQVVYIVTT
DEKFALTYNIITRKNLQRVLVFCNRRDETRRLAETLDRYRINCAVLSGEVPQKKRIRTLE
QFKAGKIRVLVATDVAGRGIHIEDMDYVVNFTLPRDPEDYVHRIGRTGRAGAAGTSISFA
CEEDSFYLPAIEEFIGRPLHCIPPEDHYLELPPAPRRRKPSSQGKPGHGPGRGGQGRRRR
RPSQGGGGPKRQYGKRGGRPKRSGAGKPRRTPPA
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
gtgcccccggaaccgggcaagacccggttccacgatctggatctccccgatccggtgctg
catgccgtcgccgatgtcggattccaatactgcacgcccatccaggccgagatcatgccg
gcaaccctcaagggccgggatgcgttcggccgggcccagaccggcaccggcaaaaccgcc
gcctttctcattactgtgcttacccggatgctggccaatcccctcaaggggaaaagaccc
cccggtaccccccgggtgctgatcattgcgccgacccgtgaactggtcctgcagattgcc
gatgaagcccaccttctcgccgcccattgtcactttaccatcgtgagcgtattcggcggg
atggactacgaaaagcagcgacggcagctgcacggccggccggtggacattgtggtggcc
acgccgggacgcctgctggatttcaagcgccgcagggacctggacctgaagcgggttgag
atgctgattctggatgaggccgatcgcatgctcgacatgggattcatccccgatgtgcgc
cagattgtctacagcacaccccacaaggataagcgccagaccctgtttttcagtgccacg
ctcacaccggacgtcacacggctgagtgcaagctggacgcgggacccggtgtccgtcgag
atcgaaccggaacaggtggccgtggacaccgtgaaccaggtggtctacatcgtcaccacc
gatgaaaaatttgccctgacctacaacatcatcacccgcaagaatcttcagcgcgtgctg
gtcttctgcaaccggcgtgatgagacccggcgcctggcggaaacgctggaccgctaccgg
atcaactgtgcggtcctgtccggcgaggtgccgcagaaaaagcggatccggacgctggaa
caattcaaggccggaaagatccgcgtactggtggccaccgatgtggccggacggggcatt
cacatcgaagacatggattatgtcgttaattttacgctgccccgtgatcccgaagactat
gttcatcgaataggacgaacgggccgggccggtgcggccggaacctccatcagctttgcc
tgcgaggaggattccttctacctgccggccatcgaggagttcatcggccggccgcttcac
tgcattccgccggaagatcactatctggaactgcctccggccccgcgacggcgcaaaccc
agctcccagggcaagcccggacacggtcccggcaggggcgggcaggggagacgacgacgg
cgaccgagccagggcggcggcggtcccaaacggcaatatggcaagcgtggcggccgcccc
aagcgctccggagccggaaagccgagaaggacgccgcctgcatga
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