Desulfosarcina alkanivorans: DSCA_05090
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Entry
DSCA_05090 CDS
T06544
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
dalk
Desulfosarcina alkanivorans
Pathway
dalk03410
Base excision repair
dalk03430
Mismatch repair
dalk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
DSCA_05090 (recJ)
03430 Mismatch repair
DSCA_05090 (recJ)
03440 Homologous recombination
DSCA_05090 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dalk03400
]
DSCA_05090 (recJ)
DNA repair and recombination proteins [BR:
dalk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
DSCA_05090 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
DSCA_05090 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DSCA_05090 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BBO66579
UniProt:
A0A5K7YFN7
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All DBs
Position
complement(548506..550230)
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AA seq
574 aa
AA seq
DB search
MKKQWQIHNPRPETVRTLSRQLGCSPLIARLLAIRGVGSGEEASRFMNPSLSSLTPPQEL
PGMEAAVRRIHRGLAAGQKILVYGDYDADGITATALLVAFLRRCGARVSYYIPHRIADGY
GLGADFIRTRAMATGTDLIITADCGSGSGEAITLARKAGIHTIVTDHHPVIQLPDAALAV
VNPQREDSRSNLAPLAGVGVAFYLVIALRTHLRTAGFWKHRREPNLKRLCDLVALGTVAD
VVPLIGENRTLTAAGLQQINRHARPGIDALMRMSGSPGTPVDAESIAFKLAPRLNAAGRL
AHARMACELLLADSRPKAARLARALCRLNSRRQTMENQLLESIMDRLTSFPGRLDRSVLV
VDGDRWHEGILGIVAARLVRQFNRPAVVISSRNGTSKGSGRSIDGIDLSAALEQCRDLLD
RFGGHPLAAGLSLKSANTKAFKDRLETIVGRMMTDQDVEPKLSIDARVPLGQVTPALMAS
LERLGPFGQGNPYPLFMDTGVRVHACKPVGDRHRRMVLECGTGTGDTLPAIQFNITGGPM
PSNRLEKIAYRPQWNYWKGRKRLQLMVEDLAPES
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacaatggcagattcacaatccacgcccggaaaccgttcgcaccctgtctcgc
cagctcggctgcagcccattgattgcaaggcttctggccattcgcggcgtgggatccggt
gaagaggccagccgttttatgaatccgtccctgagcagcctgacgccgccacaggaactg
cccggtatggaggccgccgtccgtcgaatccaccgggggctggcagcgggccagaaaatc
ctcgtgtacggcgattacgatgcggacggcattaccgccaccgccctgctggtcgccttt
ctcagacgctgcggtgcacgggtcagctattacatcccccatcggattgccgacggctat
ggtctgggagccgatttcatcaggacccgggccatggccaccggcacggacctgatcatt
accgccgactgcgggtccggcagcggcgaggccatcaccctggcccgcaaagccggcatc
cataccatcgtcaccgatcatcatcccgtcatccaactgcccgatgcggccctcgccgtc
gtcaatccccaacgggaagacagccggtcgaatctggcgcccctggccggtgtgggggtc
gctttttacctggtcatcgccctgcgaacccatttgaggacagcgggtttctggaaacac
cgcagggagccgaacctgaaaaggctgtgtgatctggtggcgctgggcaccgtcgccgat
gtcgtccccctgatcggtgaaaaccggaccctgaccgcagccggccttcaacagatcaac
cggcacgcacggcccggtatcgacgcattgatgcgcatgagcggttcgccgggcacaccg
gtcgacgccgaatccatcgccttcaagctggcgccccgtctcaatgcggccggccgtctg
gcccacgcgcggatggcctgcgaactgctgctggccgacagccggccaaaagccgcccgc
ctggccagagccctttgccggctcaacagccggcggcaaaccatggaaaaccaactgctg
gagtccatcatggaccggctgacgtcctttcccggccggttggaccggtcggttctggtg
gtcgatggcgaccgctggcacgagggcattctgggcatcgtcgcggcccggctcgtccgg
caattcaatcgccccgccgtggtcatcagttcccgaaacggcacgagcaagggatcgggc
cgcagcattgacggtatcgatctgtccgcggcgctcgagcagtgcagggatctcctggat
cgtttcggcgggcatcccctggccgccgggctgtccctcaaatccgccaacacgaaggca
ttcaaggaccggctggaaacgattgtaggccggatgatgaccgatcaggatgtcgaaccg
aagctgtcgatagacgcccgggtccccctcgggcaggtcaccccggcgctgatggccagc
ctggagcggctcggtccattcggccagggcaacccctaccccctgtttatggataccggg
gttcgggttcacgcctgcaaaccggtcggtgaccgccatcgccgtatggtcctggagtgc
ggaaccggcaccggagacacgcttccggccatccagttcaatattaccggcggcccgatg
ccatccaaccggttggaaaaaattgcctatcgcccacagtggaattactggaaggggaga
aaacgcctccagctgatggtcgaagatctcgccccggaatcctga
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