Desulfosarcina alkanivorans: DSCA_10690
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Entry
DSCA_10690 CDS
T06544
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
dalk
Desulfosarcina alkanivorans
Pathway
dalk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
DSCA_10690 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dalk03400
]
DSCA_10690 (recB)
Enzymes [BR:
dalk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
DSCA_10690 (recB)
DNA repair and recombination proteins [BR:
dalk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
DSCA_10690 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_22
DUF87
AAA_11
ResIII
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
BBO67139
UniProt:
A0A5K7YH31
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All DBs
Position
complement(1184933..1188586)
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AA seq
1217 aa
AA seq
DB search
MTDSLSPAFHPIEDINRLDLSRHALVEASAGTGKTYTIENLVVRLLKEDPDVGLENILLV
TFTEKATSELKVRIRQKIEQSLDHDPDLTDMARQKLGESLDGFDNAAIYTIHGFCHTLLK
EFPFETGSLFVQEVVDDAPLLGKLLHEAMRSDWPHRYGHRLETLLALSNYSAGADAFVET
ATALAQRLSGDPSREEVIPDPATLDVDSLWQAAERTILALKDLVGTPPRLADGYGRLNIN
KRSRAAILRDMVVPLEQALETVGPGTCRLVEFQAVVAAFGARHSSGRRNIDRLVPEKWLK
AGDNLHECPHLAAIRDRLDTLIRLFSDLSHVLMLNSVDRLQKDARETKTRNGWLSYQDML
SRVADFLDGAGADDGIRKIRNRYRVAFVDEFQDTDDVQWRIFSRLFLHDGHDAPDNRLFL
IGDPKQAIYAFRGADVFTYLEARQRMANLAGKGRANLYDLRVNWRSTPELVDVFNRMFGQ
ADWFGTRENRGPFDIGYAPSASPDSQPGPCETGCDRSKRPPFNIIDLTSAKSHASAKRLL
AETICREIRYLVGQGGIRIADGEGRDRALHFGDIAILVRSQSEFALIEPLLVESSIPFAY
YRKPGLFQCRQAHWLSMVLRAVWTPQHAATVRMALLTPFFDMSPAGLGAWRELPAAHASL
RLLERWHADARDRRWGPLFQSVMEDSGLTLRHCTDAGWERTETNLQQLFDFLEEAAYSRN
LDGGGLVALLDSLRLTGVGAGPDADIHQIEDEGDKVQILTMHVSKGLEFPVVFIAGGLTV
RNDSGLQVYHALDAGRPERVCRRVIDLTAATGREQAEKENIDENKRLYYVAFTRARLKLY
IPYFPDGRNYGWLGPVCRFVSTSVEQAFKNASGALPSGAWHDAGSTAPSPHERTRRGDDG
TKARLNLPTGALLPGTNDFRGRKVSLESFSSIGRWIRRSPVGHDHQPASFRLVDGMGHED
DEPAAAPSTGPADPDVSDGLPGGARMGSMFHHIFENIDFQTVVAGPTDILAHDASRNIIR
SAMALYRIEPLWTAPIARMVAATLRMPIDLDGRSLVLGRLTPSRRRHEMEFYFPLATSEP
GGTPVPGCTLSAGRCREMMIRGFVDLVFRWQGRYCIADWKSNRLSGGYGQDDMAGEMAAA
GYDLQYQLYTVAVLRWLKHQLGDRFDPHRHFGGVFYLFIRGMGAGGADGVFHVPPEQLLP
LERLQEIINQQIAGIQW
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgacggactcactgtctccggcatttcatccgatcgaggacatcaatcggctggatctt
tcccggcacgccctggtggaggcatctgccgggacgggaaagacctataccatcgagaac
ctggtggtccgcctgttgaaagaagaccccgacgtcggactggagaatattctgctggtg
acttttaccgaaaaagccaccagcgaactgaaagtgcgcattcgccagaaaatcgagcag
agtctggaccatgatccggacctgaccgatatggcccggcaaaagctgggggagagcctg
gatgggtttgacaatgccgccatctataccatccacggtttctgtcacaccctgttgaag
gaatttccttttgaaaccggaagcctgttcgtgcaggaggtggtcgacgacgcccccctg
ctggggaagctcctgcacgaagcgatgcgatcggattggccgcatcgatacggccaccgc
ctggaaacgctgctggccctttccaactattcagcaggtgccgacgcgtttgtggaaacc
gccaccgcattggcgcagcggctgtccggtgatccctcccgcgaagaggtgattcccgat
ccggccacactggatgtggacagcctgtggcaggcggctgaaaggacgatactggcgctc
aaagacctggtggggacgccgccccggctggctgacggatacggacggctcaacatcaac
aaacggtcccgggccgctatccttcgcgatatggtggtgcccctcgaacaggcgctggaa
accgttggacccggcacctgccggctcgttgagttccaggcggtggtcgccgcctttggg
gcgcgccattcatccggcagacgcaacatcgaccggctggtccctgaaaaatggttgaag
gccggggacaacctgcatgaatgcccccacctggcggccatccgtgatcggctcgacacc
ttgatccggctgttcagcgacctttcccacgtgttgatgctgaattccgtggaccgattg
caaaaggacgccagagaaaccaaaacgcgaaacgggtggctcagctatcaggacatgctc
agccgggtggctgatttcctggacggcgccggtgcggacgacggcatccggaaaattcgc
aaccgctaccgggtcgctttcgtggatgagttccaggataccgacgatgtgcaatggcga
atcttcagccgtcttttcctgcatgatggccacgatgcgccggacaatcggctgtttttg
atcggtgaccccaaacaggccatttacgcttttcgcggcgccgacgtattcacctacctg
gaagcccgacagcggatggccaacctggccggcaagggccgggccaacctgtatgacctg
agggtgaactggcgcagcaccccggaactggtggacgtcttcaaccggatgtttggccag
gcagactggtttggcacccgggaaaaccggggccctttcgacatcggatacgcaccgtcc
gcttccccggattcgcaaccggggccctgcgagaccggctgcgaccggtcgaagcgcccg
ccgttcaatatcatcgacctgacctcggccaaaagccatgcgagcgccaagcgcctgctg
gctgaaaccatttgccgggagatccgctatctggtggggcaggggggcatccgcattgcc
gacggcgaggggcgcgaccgggcgctgcatttcggcgatattgcgatcctggtgagaagc
cagtcggaatttgccctgatcgaaccattgcttgttgaatcgtcgatcccctttgcctat
taccgtaagcccggcctgtttcaatgccgccaggcccattggctcagcatggtgctccgt
gcggtctggacgccccaacatgccgccacggttcggatggccctgctgactccttttttc
gacatgtctccggcgggcctgggagcatggcgcgaactgccggcggcgcatgccagtctg
cgactgctggagcgctggcacgccgatgcacgggacagacgctgggggccgcttttccag
tcggtgatggaagactccggcctgacactgcgtcactgcacggatgccggctgggagcgc
accgaaaccaatcttcagcagctgttcgattttctggaagaggcggcgtattcccggaac
ctggacgggggcggcttggtggccctgctggacagccttcgcctgaccggcgtcggcgcc
ggacccgacgccgacatacaccagatcgaagacgagggcgacaaagtccagattctgacc
atgcatgtcagcaaggggctggaattcccggtggtttttatcgccggcggattgaccgta
cgcaatgacagcggattgcaggtatatcacgccctggatgccgggcgccccgagagggtg
tgccggcgggtgatcgacctgacggcggccaccggccgggagcaggcggaaaaagagaat
attgatgaaaataaacgcctatattatgtggcatttacacgagcacggctaaagctttac
attccttattttcccgacggccgaaactatggatggctggggccggtttgccggttcgtc
tcaaccagtgtcgaacaggcatttaaaaatgcctccggtgcgctgccctccggtgcgtgg
cacgacgccggcagcacggccccgtcgccccatgagcggacgcgccgcggggacgacgga
accaaggcccgactgaatttgccgaccggcgcactgctgcccggtacgaacgatttccgg
ggccggaaagtctccctggaatccttttccagtatcggccggtggattcgccggtcgcct
gtcggccatgaccaccagccggcttccttccgcctcgttgacgggatggggcacgaggac
gacgaacccgctgcagccccatcgaccggaccggcggacccggacgtgtccgacgggctt
cccgggggcgcgcgcatggggtccatgtttcaccatatttttgaaaacatcgattttcag
accgtggtggcggggcccacggacattctggctcacgatgcttcccgaaacatcattcga
tcggccatggcgctctaccggatcgaaccgctctggacggcgccgatcgcacggatggtc
gccgccaccctgcgcatgcccattgacctggatggccgttccctggtccttggacgcctg
accccgtcccggcggaggcacgaaatggaattctattttcccctggcgacatcggagccc
ggtgggacgccggtacccgggtgcaccctgtcggccggccgctgccgggagatgatgatc
cgtgggtttgtcgatctggtttttagatggcagggccggtattgtatcgctgactggaaa
tccaaccggctgtcgggaggatatggacaggacgacatggccggagagatggccgcagcc
ggctacgacctccagtaccagttgtacaccgtcgctgttctgagatggctcaagcaccag
cttggggaccgttttgacccccatcgccatttcggcggggtattttacctctttatccgg
ggcatgggggcagggggggcagatggtgtctttcatgttcctccggaacaactgctgcct
ctggaacgcctccaggaaatcataaaccaacagatcgcggggattcaatggtga
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