Desulfosarcina alkanivorans: DSCA_13590
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Entry
DSCA_13590 CDS
T06544
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
dalk
Desulfosarcina alkanivorans
Pathway
dalk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCA_13590 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dalk03019
]
DSCA_13590 (rhlE)
Enzymes [BR:
dalk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DSCA_13590 (rhlE)
Messenger RNA biogenesis [BR:
dalk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DSCA_13590 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Peripla_BP_4
Utp25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
BBO67429
UniProt:
A0A5K7YHT4
LinkDB
All DBs
Position
1526327..1527670
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AA seq
447 aa
AA seq
DB search
MSFDHLGLRSELLEAVKAKGYTAPTPIQSRAVPVILGGRDILARAQTGTGKTDAFALPLV
EILSRENISARHPRALVLAPTRELALQVGETIKDYARRVSMRCTVVHGGGRINPQIDRLR
RGIDILVATPGRLLDLSGQRHLDLSRIGFLVFDEADRMLDLGFSEAIAEILDLVPIRRRT
MLFSATYTPSIRNLAAVMLKEPQEIEATPSLTAAESVVQKVHLVNRANKCALLVHLLTKG
NWDRILVFTRTRHGANKLTEKLSAQGIVAAAMHGDKSQSSRTRTLQQFKEGRIRVLVATD
VAARGLDISNLPHVVNYDMPGTPEDYVHRIGRTGRAGVRGIAVSLVSPDEKRHLQAIEKL
LEQKIPVETVDGYTEDSDVPDYVLFRPGSLASHKKADRDLKEMVLKRNARKQESKSRTAG
KKRKSLKKPARPGFPRPPKPGKPKRRK
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgatcatcttggcctgcggagtgaactgctcgaggcagtgaaagcaaaaggg
tacaccgcccccacccccattcagtcccgggccgttcccgtcattctcggcggacgggac
atcctggcacgcgcccagaccggaacgggaaaaacagacgcattcgccctcccactggtc
gaaatcctgagccgtgaaaacattagcgcgcggcacccccgcgcactggtcctggccccc
acgcgggaactggcgcttcaggtgggggagaccatcaaggattatgcaaggcgcgtttcc
atgagatgcacggtggttcacggggggggtcgcatcaatccgcagatcgatcgactcagg
cgcggcatcgatatcctggtggccacaccgggccgcctgctggacctgtccggccagcgg
catctcgatctctcccggatcggttttctggtttttgacgaagcggaccgaatgctggat
ctgggcttcagcgaagcgatcgccgaaattctcgatctcgtccccattcgacgccggacc
atgctcttttccgccacctacaccccatcgattaggaatctggccgcagtcatgctcaag
gaacctcaggaaatagaggcaacgcccagcctgacagcagcagaatcggtggtccagaag
gttcacctggtgaaccgcgccaacaagtgcgcgctgctggtccacctgctcacgaaaggc
aactgggaccgcatcctggtcttcacccgtacccgccatggcgccaacaaactcaccgag
aagctgtccgcgcagggaatcgttgcggcggcaatgcacggcgacaagagccagtcttcc
cggacacggaccctccagcagttcaaagagggccggatccgggttctcgtggcaacggat
gtggccgcgcggggtctggatatcagcaacctgccccatgtggtcaattacgatatgccg
ggcactcccgaggattatgttcaccgcatcggccgcaccggccgtgccggggtcaggggc
attgccgtttccctggtcagccccgatgaaaaacgacatcttcaggccatcgaaaaactg
ctggagcagaaaattcctgtggaaacggtggacggctataccgaggacagcgatgttccg
gattacgttctctttcgccctggcagtctggccagtcataaaaaggccgacagggaccta
aaggagatggtcctcaagagaaatgcgagaaaacaggaatccaaatccaggaccgcaggc
aaaaaaaggaagtccttaaaaaaaccggcccggccaggattcccgcgaccaccgaaacca
ggcaaacccaaaaggagaaaatag
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