Desulfosarcina alkanivorans: DSCA_27380
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Entry
DSCA_27380 CDS
T06544
Name
(GenBank) ribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dalk
Desulfosarcina alkanivorans
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dalk03016
]
DSCA_27380
Enzymes [BR:
dalk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
DSCA_27380
Transfer RNA biogenesis [BR:
dalk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSCA_27380
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
HTH_RNase_II
LexA_DNA_bind
DsrC
Motif
Other DBs
NCBI-ProteinID:
BBO68808
UniProt:
A0A5K7YIQ0
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All DBs
Position
3056182..3058107
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AA seq
641 aa
AA seq
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MVMESGNQRLRLLTEHNREVKIAAQRLSHRGKTRLEQNSGRNRMVEWLRELSIKRNAIAG
EVQVEELWEILNHEQAWIDLKTMTGLCFPEDADDDHESGVIRALFKSRRHFKFKPDRFLP
HTEAQVAAILAMDKKAARQERLVAAGAEWIRSVQAGSTVEMTQCHRELAEIFQSYYLAEK
ESPHFHTARAIMKKAGLTSPEAIFSHLVAVGVWTPDENVDLMRYKIPTDFSPSVLELAQS
VPAADAFIGSGRVDLTHLNTITIDGQSTLDFDDALSFETRDDHFLVGIHISDVAQYIKKG
DLLDREARSRGSSIYMPDNRISMAPPLLAEHRLSLKKDHIRPAISTMVKIGLSGDIISYD
IFPSIIRVDQQLSYFEANISAEEGQAIAALYDIAIRFRETRLSQGAIQITLPEINVWLDD
SGMPVVNRVNRESPGRMLIAEMMILSNWLSARFLAENKTPAIFRSQPKPKDRILKNGTGT
LFQNWMQRKLLNRFVLRPGPEHHCGLGLDAYVTATSPIRKYFDLVTQRQLRAVLGLERAY
TEKEIEEIIGQLAQPMADVGRIQFRRNRYWLLKHLEGRIGEKEEAIVLQRRRNAYAILLK
AYMIECPLPQSSGIDLKPEDLVQVTIQHVNARNNTLSVFMG
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
gtggtgatggagagcggcaaccagcgattacggctgctcaccgagcacaaccgggaggtt
aaaatcgccgcgcaacggttgtcgcaccgcggaaaaacgcgcctggaacaaaattcggga
agaaaccggatggtggagtggctccgcgagttgtccatcaagcgaaacgccattgccggc
gaagtccaggtcgaagagctctgggaaatcctcaaccatgagcaggcatggatcgatttg
aaaaccatgaccggcctgtgctttccggaagatgccgacgacgaccatgaatcgggagtg
atccgggccctgttcaagagccggcgccatttcaaattcaagcccgaccgattcctgccc
cacaccgaagcacaggtggccgccatccttgcaatggataaaaaagcggcccgacaggag
cggctcgtcgccgccggtgccgaatggatcagatcggtgcaggcgggctcgacggtcgaa
atgacccaatgccaccgggagttggcggaaatattccaatcctattacctggccgaaaag
gaaagcccccatttccacactgcgcgggccataatgaaaaaagccggcctcacctcaccg
gaagccattttcagccacctggtcgccgtgggggtatggacgcccgatgagaatgtggat
ctgatgcggtataaaattcccacggacttctcgccgtcggtgctcgaactggctcaatcc
gtgccggcggcagacgcgttcatcggcagcggccgggtggacctcacccacctgaacacc
atcaccatcgacggccagtccacgcttgattttgacgacgctttgagcttcgaaacccgg
gacgaccactttctcgtggggatccatatttccgatgtggcccagtacattaaaaagggc
gatctgctggaccgggaggcacggtcgcggggcagttccatctacatgccggacaaccgg
atttccatggcgccgccgcttctggcggagcaccgcttaagcctgaaaaaggaccacatc
cggccggccatcagcaccatggtgaaaatcggcctgtccggcgacatcatcagctatgat
atttttccatccatcatccgggttgaccagcagctcagctatttcgaggccaacatcagt
gccgaagagggccaggccatcgccgccctctacgacatcgccatccggttcagggaaacg
cgtctgagccagggtgccatccagatcacccttccggaaatcaacgtctggctggatgac
tccggaatgcccgtggtcaatcgggtcaatcgagaaagtccgggacgaatgctgatcgcc
gaaatgatgatcctgtccaactggctgtccgcacgatttctggcggaaaacaaaacgccg
gccattttcaggtcgcagcccaagcccaaagaccgcattctaaaaaacggcaccggcacc
ctgttccagaattggatgcagcgcaaactgctgaaccgttttgttctgcggcccgggccc
gagcaccactgcgggctggggctcgacgcctacgtcaccgccacctcgcccatcaggaaa
tacttcgacctggtcacccagcgccagctccgggcggtgctgggtcttgaacgggcatac
acggaaaaggaaatcgaggaaattatcgggcagctggcccagccgatggccgacgtcggg
cggatccaatttcgcagaaaccgctactggctgctcaagcacctggaaggccggatcggt
gagaaagaggaagccatcgtcctgcagcgccggcgaaatgcctatgccatcctgctaaag
gcgtacatgatcgagtgccccctgccccaatccagcggtatcgacctgaagcccgaagac
ctggtgcaggtgaccattcagcatgtcaacgcgcgcaacaacaccctttccgtgtttatg
gggtag
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