Desulfosarcina alkanivorans: DSCA_49530
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Entry
DSCA_49530 CDS
T06544
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
dalk
Desulfosarcina alkanivorans
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dalk03016
]
DSCA_49530 (rtcB)
Enzymes [BR:
dalk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
DSCA_49530 (rtcB)
Transfer RNA biogenesis [BR:
dalk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
DSCA_49530 (rtcB)
Prokaryotic type
tRNA splicing ligases
DSCA_49530 (rtcB)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BBO71023
UniProt:
A0A5K7YS77
LinkDB
All DBs
Position
complement(5576591..5578024)
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AA seq
477 aa
AA seq
DB search
MQLKQISPYCYEIPQSGSMNVPGRVFMSERMASALSEEEALKQVANVATLPGILTAAMAM
PDMHWGYGFPIGGVAAFDWDTGVISPGGVGYDINCGVRLAGTGLEKKEILPAVERLVTAL
FQNIPSGVGSTGSVKLSVKEEMRVLREGGRWAVRQGLGEPSDVERTEDGGCMAEADPSVI
SERALMRGTRQLGTLGSGNHFLEVGVVDEIFDERAARAFGLFPDQVTVLLHSGSRGLGYQ
VCDDSLAFMARHVRTLDIQLPDRQLACAMIRSEAGRRYFAAMACAANYAWANRQILLHRA
RETFQQVLGIGPRDLAMHQVYDICHNIAKREEHTVDGKKRIVCVHRKGATRAFPPGHPAV
CEAYRQTGQPILIPGDMGTASYVMAGTRTAMAQSFGSTCHGAGRVLSRKAAKKRSRGRAI
HRELADKGILVKWTGRSTLAEEMPEAYKDIDQVVDAVHGAGLSKKVARLRPVCVIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgaaacagatcagcccctattgttatgaaattccccaatccggatccatgaac
gtgccgggccgggtgttcatgagcgagcggatggccagcgcgctgtctgaggaggaggcc
ctcaaacaggtggccaacgtggccacgctgcccggcatcctcacggccgccatggccatg
cccgacatgcactggggctacggcttccccatcggcggcgtggccgccttcgactgggac
accggggtcatttcaccgggcggggtgggctacgacatcaactgcggcgtccgcctggcc
ggcacgggccttgaaaaaaaagagatcctgccggcggtggagcggctggtcacggccctg
ttccagaacatcccgtccggggtgggatccaccggttcggttaaattatcagttaaagaa
gagatgagggtgctgcgggaaggcggacgctgggccgtgcgccagggcctgggggaacct
tcagacgtggagcgcaccgaagacggcggctgcatggccgaagccgatccgtccgtgatc
agcgaacgggccctgatgcgcggtaccagacagttgggcacattgggaagcgggaaccat
ttcctcgaagtgggggtggtcgatgaaattttcgatgagcgggcggcccgggccttcggc
ctcttcccagaccaggtcaccgtgctcctgcactcgggttcccgtggtctggggtaccag
gtgtgcgacgattctctggccttcatggccagacacgtcaggaccctggacatccagctg
ccggatcgccagctggcctgcgccatgatccgctccgaggccggccggcgctattttgcc
gccatggcctgtgcggccaactacgcctgggccaaccgccagattcttttgcaccgggcc
cgggaaacctttcagcaggtgctgggcatcggcccccgggatctggccatgcaccaggtg
tatgacatctgccacaacatcgccaagcgcgaggagcacacggtggatgggaaaaaacgg
atcgtctgtgtgcaccgcaaaggcgccacccgcgcctttccaccgggccacccggccgtc
tgcgaggcctaccggcagaccgggcagcccattttaatccccggggacatgggtacggcg
tcttacgtcatggccggcacccgaaccgccatggcacaaagcttcgggtccacctgccat
ggcgccggccgggtgctcagccgcaaggccgccaaaaaacggagccggggacgggccatc
catcgggaactggccgacaaaggcatcctggtcaaatggaccggccgcagcaccctggcc
gaagagatgcccgaggcctacaaggacatcgaccaggtggtggatgcggttcacggggcc
gggctgtccaaaaaggtggcccggctgaggccggtttgtgttatcaaggggtag
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