Desulfosarcina alkanivorans: DSCA_51820
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Entry
DSCA_51820 CDS
T06544
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
dalk
Desulfosarcina alkanivorans
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dalk03016
]
DSCA_51820
Enzymes [BR:
dalk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
DSCA_51820
Transfer RNA biogenesis [BR:
dalk03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
DSCA_51820
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
DNA_pol_A_exoN
Motif
Other DBs
NCBI-ProteinID:
BBO71252
UniProt:
A0A5K7YNA6
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All DBs
Position
complement(5840842..5841990)
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AA seq
382 aa
AA seq
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MKIITAPAYRVIRTVSELEQFVDRMSSEKILAVDLEADSMFHFQEKVCLLQIAGNGENVV
IDPLAVSDLSPLAPLFSDKEICKVFHGSDYDVRSLYRDFSIEINNLFDTQLASMYVGERE
TSLGAMVSKRFGIKLDKRYQKKDWSQRPLPEGMIEYAASDVFHLIPLARQLMEELASKER
LEWVREECDYLSTVRPVENGCDPLFLRFRGAGRLPRRNLAVLEGLLQYRRDLAIKKDRPL
FKVFSNTALLKIATEMADTPKAMESARCLSAKQIRIYGKPLARVVQRANSLPAKDLPVYP
RRRRQSVSPKVPERIKAIKAWRDRLAECLELDPALLFNKTLMTAIAVHKPSDIDGLKQVE
GIRRWQVEAFGKDILKALSTQP
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcatcaccgctcctgcttaccgggtcatccgcaccgtttccgaactggaacaa
tttgtcgaccggatgagcagcgagaaaatcctcgccgtggatctggaggcggattccatg
tttcacttccaggaaaaagtctgcctgttgcagatcgccggcaacggggaaaacgtggtc
atcgacccccttgcggtcagcgatctttctccccttgccccccttttcagcgacaaggaa
atctgcaaggtgtttcacggttcggattacgacgtgcgatccctctaccgtgatttttcg
atcgagatcaacaacctgttcgatacccaactggcaagcatgtatgtgggcgaacgggaa
accagtttgggagcgatggtcagcaaacgattcggcatcaagctggacaagcggtatcag
aaaaaggactggtcccagcgccccctgcccgaaggcatgatcgaatacgccgcatcggac
gtgttccatctgatcccgctggcccgccagctcatggaagaactggcctcaaaagaacga
ctggaatgggtccgggaggagtgcgattatctttccactgtcagaccggtggaaaacgga
tgcgaccccctgtttctcaggttccgcggcgccggccgcctgccgcgacgcaacctggcg
gtgctggagggcctgttgcagtaccgccgcgacctggccatcaaaaaggaccgccccctg
ttcaaggtcttttccaacaccgccttgctgaaaatagccacggaaatggccgataccccc
aaggccatggaatccgcccggtgcctgagtgccaaacagatccgcatttatggcaagccg
ctggccagagtggtgcaacgggccaacagcctgcccgccaaagatctccccgtctacccg
cggcggcggcgccagtcggtatcgcccaaggtgccggaacggatcaaagccatcaaagca
tggcgggatcgtctggccgaatgcctggaactggatcccgccctgttgttcaacaagaca
ttgatgaccgccatcgccgtccacaagccgtcggacatcgatggactcaaacaggtcgaa
ggcattcgccgctggcaggtcgaggcgtttggcaaggacatcctgaaggcgctatcgacc
cagccgtga
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