KEGG   Desulfosarcina alkanivorans: DSCA_54830
Entry
DSCA_54830        CDS       T06544                                 
Symbol
rnj
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
dalk  Desulfosarcina alkanivorans
Pathway
dalk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dalk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DSCA_54830 (rnj)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dalk03019]
    DSCA_54830 (rnj)
Messenger RNA biogenesis [BR:dalk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DSCA_54830 (rnj)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C Lactamase_B RMMBL Lactamase_B_2 Anti-Pycsar_Apyc1 Lactamase_B_6
Other DBs
NCBI-ProteinID: BBO71553
UniProt: A0A5K7YU25
LinkDB
Position
6185505..6187154
AA seq 549 aa
MLKLIPLGGLGEIGLNMMVVEYGDTIFIIDAGIMFPEAYMLGVDYVIPDMDYLRQNRTRV
SGVILTHAHEDHIGALPFLLREINVPVFGTPFTLGIVRHKLEEHDLLATASLHEVLPRER
LKIGPFEVEFIRVNHSVVDGVGLAIRTPVGLVVHTGDFKMSQTVVEGMLTDVNRFAQCGE
EGVLALLSDSTNVEKDGHTISAQEIGAELARIMEAATGRIIVALFASNIARIQQVVNIAQ
TRHRKVVFNGRSIEVSVAIARKLGYLNVPEGMEIDIDEVNTFPDDEVIMITTGSQGEPMS
ALARMAAGTHKQIKIHQEDKVILSSKFIPGNEKAIANIINNLYRRGADVVYEKISNIHVS
GHAFREELKMMLNLVKPRFFMPVHGEYRHLVLHTRLARQVGIPDDHLILAQNGQIIELEE
NRFRIRDGISAGRVLIDGKGIGDVGRSVLKERRVLSEEGLVVVNMAFDEETGIVVYGPDI
VSRGFVFETETGYLLQDAQCVVLEIVEDVTPDVPNRVDRIRSRIQTALRQYFFFTIGRRP
VILPFLVEI
NT seq 1650 nt   +upstreamnt  +downstreamnt
atgctgaaactcatcccgctgggcggcctgggcgaaatcggcctgaacatgatggtggtg
gagtacggcgatacgatttttatcatcgatgccggcatcatgttcccggaagcctatatg
ctgggcgtggattacgtcattccggacatggattatctccgccagaaccgcacacgggtt
tccggggtcattctcacccatgcccatgaggaccacatcggggcgcttccgttcctgctc
cgggagatcaacgtgccggttttcggtaccccctttaccctgggcatcgtgcgccacaaa
ctggaagagcacgacctgctcgctacggcctcgcttcacgaggtgctgcccagggagcgg
ctgaaaatcgggcccttcgaggtggagttcatccgcgtcaaccacagcgtcgtggacggg
gtgggactggccatccgcacccctgtcggcctggtggtccacaccggcgacttcaagatg
agtcaaaccgtggtggaaggcatgctcaccgatgtcaaccgcttcgcccagtgcggggaa
gagggggtgctggccttgttgtccgattccaccaacgtggagaaggacggccacaccatt
tccgcgcaggagattggcgccgaactggccagaatcatggaagccgccaccggcaggatc
atcgtggccctttttgcttccaacatcgcgcgtatccagcaggtcgtcaacatcgcccag
acacgccaccggaaagtcgtcttcaacggccgcagcatcgaggtcagcgtggccatcgcc
cgcaagctgggatacctgaatgttcccgaggggatggagatcgatatcgacgaggtgaat
accttccccgacgatgaggtcatcatgatcaccacgggcagccagggcgaacccatgtcc
gctttggcgcgcatggccgcgggcacccacaagcagatcaagatccaccaggaggacaag
gtcatcctttcctccaaattcatcccgggcaatgagaaggccatcgccaacatcatcaac
aatctctaccgccggggcgccgatgtcgtttatgaaaagatatccaatatccacgtgtcc
gggcacgccttccgggaagagctcaaaatgatgctcaacctggtcaaaccgagatttttc
atgcccgttcacggagaataccgccatctggtgctgcacacccggctggcccggcaggtg
ggcatacccgacgaccacctgatcctggcccagaacggccagattatcgagctggaagag
aaccgcttccggattcgcgacggcatcagcgccggccgggtgcttatcgacggcaagggc
atcggtgatgtgggacgcagtgtgctcaaggaacgtcgcgtgctttcagaggagggcctg
gtggtggtgaacatggccttcgacgaagagaccggcatcgtggtatacggcccggatatc
gtttcccgggggtttgtcttcgagacggaaacgggctacctgctccaggacgcccagtgc
gtggtcctggagattgtggaggacgtcaccccggatgtgcccaaccgggtggatcgcatc
cgcagccgcatccagacggccctgaggcagtactttttcttcaccatcgggcggcggccg
gttattcttccctttctggtggagatctga

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