Desulfosarcina alkanivorans: DSCA_54830
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Entry
DSCA_54830 CDS
T06544
Symbol
rnj
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
dalk
Desulfosarcina alkanivorans
Pathway
dalk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dalk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DSCA_54830 (rnj)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dalk03019
]
DSCA_54830 (rnj)
Messenger RNA biogenesis [BR:
dalk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DSCA_54830 (rnj)
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_6
Motif
Other DBs
NCBI-ProteinID:
BBO71553
UniProt:
A0A5K7YU25
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Position
6185505..6187154
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AA seq
549 aa
AA seq
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MLKLIPLGGLGEIGLNMMVVEYGDTIFIIDAGIMFPEAYMLGVDYVIPDMDYLRQNRTRV
SGVILTHAHEDHIGALPFLLREINVPVFGTPFTLGIVRHKLEEHDLLATASLHEVLPRER
LKIGPFEVEFIRVNHSVVDGVGLAIRTPVGLVVHTGDFKMSQTVVEGMLTDVNRFAQCGE
EGVLALLSDSTNVEKDGHTISAQEIGAELARIMEAATGRIIVALFASNIARIQQVVNIAQ
TRHRKVVFNGRSIEVSVAIARKLGYLNVPEGMEIDIDEVNTFPDDEVIMITTGSQGEPMS
ALARMAAGTHKQIKIHQEDKVILSSKFIPGNEKAIANIINNLYRRGADVVYEKISNIHVS
GHAFREELKMMLNLVKPRFFMPVHGEYRHLVLHTRLARQVGIPDDHLILAQNGQIIELEE
NRFRIRDGISAGRVLIDGKGIGDVGRSVLKERRVLSEEGLVVVNMAFDEETGIVVYGPDI
VSRGFVFETETGYLLQDAQCVVLEIVEDVTPDVPNRVDRIRSRIQTALRQYFFFTIGRRP
VILPFLVEI
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaactcatcccgctgggcggcctgggcgaaatcggcctgaacatgatggtggtg
gagtacggcgatacgatttttatcatcgatgccggcatcatgttcccggaagcctatatg
ctgggcgtggattacgtcattccggacatggattatctccgccagaaccgcacacgggtt
tccggggtcattctcacccatgcccatgaggaccacatcggggcgcttccgttcctgctc
cgggagatcaacgtgccggttttcggtaccccctttaccctgggcatcgtgcgccacaaa
ctggaagagcacgacctgctcgctacggcctcgcttcacgaggtgctgcccagggagcgg
ctgaaaatcgggcccttcgaggtggagttcatccgcgtcaaccacagcgtcgtggacggg
gtgggactggccatccgcacccctgtcggcctggtggtccacaccggcgacttcaagatg
agtcaaaccgtggtggaaggcatgctcaccgatgtcaaccgcttcgcccagtgcggggaa
gagggggtgctggccttgttgtccgattccaccaacgtggagaaggacggccacaccatt
tccgcgcaggagattggcgccgaactggccagaatcatggaagccgccaccggcaggatc
atcgtggccctttttgcttccaacatcgcgcgtatccagcaggtcgtcaacatcgcccag
acacgccaccggaaagtcgtcttcaacggccgcagcatcgaggtcagcgtggccatcgcc
cgcaagctgggatacctgaatgttcccgaggggatggagatcgatatcgacgaggtgaat
accttccccgacgatgaggtcatcatgatcaccacgggcagccagggcgaacccatgtcc
gctttggcgcgcatggccgcgggcacccacaagcagatcaagatccaccaggaggacaag
gtcatcctttcctccaaattcatcccgggcaatgagaaggccatcgccaacatcatcaac
aatctctaccgccggggcgccgatgtcgtttatgaaaagatatccaatatccacgtgtcc
gggcacgccttccgggaagagctcaaaatgatgctcaacctggtcaaaccgagatttttc
atgcccgttcacggagaataccgccatctggtgctgcacacccggctggcccggcaggtg
ggcatacccgacgaccacctgatcctggcccagaacggccagattatcgagctggaagag
aaccgcttccggattcgcgacggcatcagcgccggccgggtgcttatcgacggcaagggc
atcggtgatgtgggacgcagtgtgctcaaggaacgtcgcgtgctttcagaggagggcctg
gtggtggtgaacatggccttcgacgaagagaccggcatcgtggtatacggcccggatatc
gtttcccgggggtttgtcttcgagacggaaacgggctacctgctccaggacgcccagtgc
gtggtcctggagattgtggaggacgtcaccccggatgtgcccaaccgggtggatcgcatc
cgcagccgcatccagacggccctgaggcagtactttttcttcaccatcgggcggcggccg
gttattcttccctttctggtggagatctga
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